Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq58369 154 3e-32 seq79732 150 4e-31 seq36821 125 2e-23 seq8609 125 2e-23 seq7124 120 7e-22 >seq58369 Length=2743 Score = 154 bits (170), Expect = 3e-32 Identities = 162/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| ||||||||||||||||||||||| | || || | ||||| ||| Sbjct 708 ACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTACGGCCATCCTCG 649 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || ||||| |||||||| |||| ||| || || || || ||||||||||||||||| Sbjct 648 AGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTCTTTGTCTTGG 589 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||||| |||||||| | ||| ||| ||| || || ||||||| |||| Sbjct 588 ATTTTGGCTTTGACATTCTCAATAGAGTC---ACTGGGTTCGACCTCCAGGGTAATCGTC 532 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 531 TTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 Score = 145 bits (160), Expect = 2e-29 Identities = 166/222 (75%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || || || || || || || |||||||| ||||| |||| ||||| | Sbjct 490 GAGACGCAAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAGAGTACG 431 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||||||||| ||||| || ||||| || ||||| |||||||| || || || || || Sbjct 430 ACCATCTTCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGGATCCCCTC 371 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAG 195098 || ||||||||||| ||| ||||||||||| | ||| ||| ||| || || || Sbjct 370 CTTATCTTGAATTTTAGCCTTCACGTTCTCAATTGAGTC---ACTGGGTTCGACCTCCAG 314 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| |||||| || || | || || || || | |||||| Sbjct 313 GGTAATCGTCTTGCCAGTAAGTGTCTTCACAAAAATTTGCAT 272 Score = 141 bits (156), Expect = 2e-28 Identities = 160/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| ||||||||||| |||||||| |||| || || | |||||||| Sbjct 1164 ACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGAGAGCGTGCGGCCATCTTCT 1105 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || ||||| ||||| || |||||||||||||| || || || || ||||| ||||| Sbjct 1104 AGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGGATACCCTCTTTATCTTGG 1045 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || || ||||||| ||| ||| ||| || || || |||| || Sbjct 1044 ATCTTAGCCTTCACATTTTCAATGGAGTC---ACTGGGTTCGACCTCCAGAGTAATGGTT 988 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||||||| || || ||||| | |||||| Sbjct 987 TTGCCTGTCAACGTCTTAACGAATATCTGCATT 955 Score = 131 bits (144), Expect = 4e-25 Identities = 163/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || || || ||||| || || ||||| || ||||| || | ||| || | Sbjct 946 GAGACGCAAGACCAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTGCG 887 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||||||||| || ||||| |||||||| ||||| |||||||| || || || ||||| Sbjct 886 GCCATCTTCGAGTTGTTTACCGGCGAAGATCAGTCGCTGTTGGTCCGGGGGGATACCTTC 827 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAG 195098 || ||||| || || |||||| || || || | ||| ||| ||| || || | Sbjct 826 CTTATCTTGGATCTTGGCCTTGACATTTTCGATCGAGTC---ACTGGGTTCGACCTCCAA 770 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| |||||| || |||| || ||||| || | |||||| Sbjct 769 AGTAATCGTCTTACCAGTCAGGGTCTTTACAAAGATTTGCAT 728 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| || | || || || ||||||||||| |||||||| || || || | || || Sbjct 265 TCGGAGCCTGAGGACCAGATGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGAGAGGGT 206 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||||||| || || || ||||| || ||||| ||||||||||| || || || Sbjct 205 GCGCCCATCTTCGAGTTGTTTGCCGGCGAAAATCAGTCGCTGTTGGTCTGGTGGTATCCC 146 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||| || || ||||| ||||| || | ||| | || || || | Sbjct 145 CTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATCGAGTCACTAGGCTCGACCTCCAA 86 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || |||||||| || ||||| | ||||| Sbjct 85 AGTGATAGTTTTGCCAGTCAAAGTCTTAACGAAGATCTGCAT 44 >seq79732 Length=1757 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | || |||||||| |||||||| ||||| ||||| ||||| | ||||| | Sbjct 1150 AGTCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATATTATAATCCGACAGAGTGCGT 1209 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || ||||| || || |||||||| || ||||| ||||||||||| || || ||| Sbjct 1210 CCATCCTCAAGCTGTTTGCCGGCGAAGATTAGCCGTTGCTGGTCTGGAGGGATACCCTCT 1269 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || ||| || || || || | ||||||| || || || ||||| Sbjct 1270 TTGTCCTGAATCTTGGCCTTTACATTTTCGATTGAGTCCGAAGGCTCAACCTCGAGGGTT 1329 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | ||||| || || | ||||| Sbjct 1330 ATAGTCTTCCCTGTTAGGGTTTTGACAAATATCTGCAT 1367 >seq36821 Length=4459 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || || || | || ||||||||||| || |||||||| | || || | Sbjct 1558 GAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCG 1499 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| ||||| || ||||| |||||||| |||| ||||||||||| || || ||||| Sbjct 1498 GCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTC 1439 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| || || || ||| || |||||||| | ||| || || || || || Sbjct 1438 CTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGT 1379 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || ||||| ||||| || || | ||||| Sbjct 1378 AATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || || || | || ||||||||||| || |||||||| | || || | Sbjct 10441 GAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCG 10382 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| ||||| || ||||| |||||||| |||| ||||||||||| || || ||||| Sbjct 10381 GCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTC 10322 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| || || || ||| || |||||||| | ||| || || || || || Sbjct 10321 CTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGT 10262 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || ||||| ||||| || || | ||||| Sbjct 10261 AATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 >seq7124 Length=12460 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| |||||||| || |||||||| || | || || | || || || | ||| Sbjct 7539 GTGCAGAGTCGACTCTTTCTGGATATTGTAGTCTGAGAGTGTGCGACCGTCCTCCAACTG 7480 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| || || ||||| ||||||||||||||||| ||||| ||||| || Sbjct 7479 CTTACCAGCAAAGATCAGGCGCTGTTGATCTGGAGGAATGCCTTCCTTGTCCTGAATCTT 7420 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||| || ||||| || | ||| |||||| || | || | ||||| || || Sbjct 7419 TGCCTTTACATTCTCGATCGAGTCGCTCGGTTCCACCTCCAAAGTTATGGTCTTGCCAGT 7360 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || || || | ||||| Sbjct 7359 CAGCGTCTTCACAAAGATCTGCAT 7336 Score = 109 bits (120), Expect = 1e-18 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || |||||||| || | || || | || || || ||||| Sbjct 7311 GTGCAGGGTCGACTCCTTCTGGATATTGTAGTCCGAGAGTGTACGACCGTCCTCCAGCTG 7252 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || || || |||||||||||||||||||| || || ||||| || Sbjct 7251 CTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGAATCTT 7192 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 | ||| || || || || | ||| ||| |||||| || | || | ||||| || Sbjct 7191 TGCCTTCACATTTTCGATAGAGTC---ACTCGGTTCCACCTCCAACGTGATGGTCTTGCC 7135 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | |||||| Sbjct 7134 AGTCAGTGTCTTCACAAAGATTTGCAT 7108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107487288101498