Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq79732 113 3e-20 seq58369 113 3e-20 seq73473 95.1 8e-15 seq7124 89.7 3e-13 seq36647 86.0 4e-12 seq36821 82.4 5e-11 seq8609 82.4 5e-11 >seq79732 Length=1757 Score = 113 bits (124), Expect = 3e-20 Identities = 155/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| || || || || ||||| ||||| || | ||| |||| || Sbjct 1159 ACCAGGTGAAGGGTGGACTCCTTTTGGATATTATAATCCGACAGAGTGCGTCCATCCTCA 1218 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| ||||| || ||||| |||||||||||| | || | ||||| ||||| | Sbjct 1219 AGCTGTTTGCCGGCGAAGATTAGCCGTTGCTGGTCTGGAGGGATACCCTCTTTGTCCTGA 1278 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCA--CCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| || || || | |||||| | ||| | |||||| |||| |||||| || Sbjct 1279 ATCTTGGCCTTTAC--AT--TTTCGATTGAGTCCGAAGGCTCAACCTCGAGGGTTATAGT 1334 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || || || ||||| |||||||| Sbjct 1335 CTTCCCTGTTAGGGTTTTGACAAATATCTGCAT 1367 >seq58369 Length=2743 Score = 113 bits (124), Expect = 3e-20 Identities = 142/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||||||||| || ||| | || |||| || || ||||| ||||| || Sbjct 234 TCCTTTTGAATGTTATAGTCAGAGAGGGTGCGCCCATCTTCGAGTTGTTTGCCGGCGAAA 175 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| || |||||| | || | |||||| ||||| ||||| |||||| || Sbjct 174 ATCAGTCGCTGTTGGTCTGGTGGTATCCCCTCTTTGTCTTGGATCTTGGCTTTGAC--AT 117 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || ||||| |||| | ||| || || | || || ||||| || || | |||||| | Sbjct 116 TCTCGATCGAGTCACTAGGCTCGACCTCCAAAGTGATAGTTTTGCCAGTCAAAGTCTTAA 57 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 56 CGAAGATCTGCAT 44 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || |||||||| ||||| || || | || |||| || || || || ||||| || Sbjct 463 TTCCTTTTGAATGTTGTAGTCGGATAGAGTACGACCATCTTCGAGTTGCTTGCCGGCGAA 404 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || ||||| || ||||| | || | ||||||||| || ||| || || ||| Sbjct 403 AATCAGTCGCTGTTGGTCCGGTGGGATCCCCTCCTTATCTTGAATTTTAGCCTTCACGTT 344 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || || |||| || || || || | ||| || || || || || || |||||||| Sbjct 343 CTCAATTGAGTCACTGGGTTCGACCTCCAGGGTAATCGTCTTGCCAGTAAGTGTCTTCAC 284 Query 34970 AAAGATCTGCAT 34981 ||| || ||||| Sbjct 283 AAAAATTTGCAT 272 >seq73473 Length=1996 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| || ||||| ||||| || || || ||| | || | || || Sbjct 1612 ACCAAATGCAGTGTAGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCGTCTTCG 1553 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| ||||| || || | ||||||||||||| | || | ||||| ||||| | Sbjct 1552 AGTTGTTTACCGGCGAAAATGAATCGTTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTAA 1493 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || ||||| || | | ||||| || | || || |||| Sbjct 1492 ATCTTAGCCTTGAC--ATTCTCGATCGAGTCGCTAGGTTCAACCTCTAGAGTAATAGTTT 1435 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCA 34980 | || || | ||||||||||| ||||||| Sbjct 1434 TGCCAGTCAACGTCTTCACAAAAATCTGCA 1405 >seq7124 Length=12460 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| || || |||||||| || | || | || ||| Sbjct 7316 ACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCCGAGAGTGTACGACCGTCCTCC 7257 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || ||||||||| | || | || ||||| || | Sbjct 7256 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGA 7197 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || || | | || || |||| | || || || | || ||||| || Sbjct 7196 ATCTTTGCCTTCACATTTTCGATAGAGTCACTCGGTTCCACCTCCAACGTGATGGTCTTG 7137 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||||||||| ||||| Sbjct 7136 CCAGTCAGTGTCTTCACAAAGATTTGCAT 7108 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || |||||||| || || ||||| || || | || | || ||| Sbjct 7544 ACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTCTGAGAGTGTGCGACCGTCCTCC 7485 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || || ||||| || || || || || ||| | || | || |||||||| | Sbjct 7484 AACTGCTTACCAGCAAAGATCAGGCGCTGTTGATCTGGAGGAATGCCTTCCTTGTCCTGA 7425 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || ||||| || | | || || || | |||||||| | Sbjct 7424 ATCTTTGCCTTTAC--ATTCTCGATCGAGTCGCTCGGTTCCACCTCCAAAGTTATGGTCT 7367 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||||||||||||||| Sbjct 7366 TGCCAGTCAGCGTCTTCACAAAGATCTGCAT 7336 >seq36647 Length=4477 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| || || ||||| || || | || |||| ||| Sbjct 4347 ACCAAGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGACAGCGTACGGCCATCTTCC 4288 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || || || || || || || |||||||| | || | || ||||| || | Sbjct 4287 AACTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGAATACCTTCCTTATCCTGA 4228 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || || | | ||||| |||| | ||| || || | || ||||| || Sbjct 4227 ATCTTTGCCTTCACATTTTCGATCGAGTCACTCGGCTCCACCTCCAACGTGATGGTCTTG 4168 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||||||||| ||||||||| Sbjct 4167 CCAGTCAGGGTCTTCACAAAAATCTGCATA 4138 >seq36821 Length=4459 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| || ||||| || || || || | || |||| || || ||||| ||||| || Sbjct 1530 TCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAG 1471 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||||| || |||||| | || | || |||||||| ||||| || || || Sbjct 1470 ATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTAAC--AT 1413 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || ||||| || | || |||||| || | || || || || || || | || || | Sbjct 1412 TCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGA 1353 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 1352 CAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| || ||||| || || || || | || |||| || || ||||| ||||| || Sbjct 10413 TCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAG 10354 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||||| || |||||| | || | || |||||||| ||||| || || || Sbjct 10353 ATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTAAC--AT 10296 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || ||||| || | || |||||| || | || || || || || || | || || | Sbjct 10295 TCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGA 10236 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 10235 CAAAGATCTGCAT 10223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324078530717232