Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq36919 150 2e-31 seq31935 140 4e-28 seq38847 95.1 1e-14 >seq36919 Length=4449 Score = 150 bits (166), Expect = 2e-31 Identities = 200/278 (72%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 ||||| ||||||||||||||||| || || ||||| || || || ||||| | |||||| Sbjct 2200 TACATCTCTGAATGAATATTTTCGATTGCAATCTGGAAGCCATAGAAACAGCGGGCTTCT 2141 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | ||||||||||| || || | | || | ||||||||| |||||||| || || Sbjct 2140 GGGATCTGTACTTCTTGACTGAAGTTCGCCACAAGATTTTCATTTACTATTCCGTCGCTT 2081 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTC 19434 || |||||||| || | || | | ||| || || || || | ||| | | | Sbjct 2080 GCGGCAAAAAAGGCAAGGACGTATGAAATGAAGTGCTTCTCGCCGTCCTTTAGAGATTCC 2021 Query 19435 CAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCT 19494 || ||| || ||||| | || || ||||||||||| |||||||| |||||| | ||| Sbjct 2020 CAGTCACCAAGGTCTTTCGCCAAGTCAACTTCTTCAACGGTCCAAAATGAAGCCACCGCT 1961 Query 19495 TTTTTATACATGTTCCATATATCACGATATTGTATAGG 19532 || || || | | ||| |||||| |||| || ||||| Sbjct 1960 TTCTTGTAAAACTGCCAGATATCATGATACTGGATAGG 1923 >seq31935 Length=5035 Score = 140 bits (154), Expect = 4e-28 Identities = 366/548 (67%), Gaps = 14/548 (3%) Strand=Plus/Minus Query 48104 TTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAAC---CCAGG 48160 ||||||||| || || ||||| |||||||| || || | ||| ||| || || || Sbjct 1901 TTCGTATTTTGTGTACAACTTTTCAAATTCTTCACCCCA-ACA--ATCGAAAAGACCTGG 1845 Query 48161 ACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATAT 48220 ||| || | |||| ||| | || ||| | || | | | || | |||||||| Sbjct 1844 ACACTCGTGAGGATCCATAAGTGTCCACTTGTCGTTGTCTCGCACGCGTCGCATAAATAA 1785 Query 48221 ATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGT-TCTTCATTGCCACTAT 48279 || || | ||||||||| || || | ||| | || ||| ||| ||||| |||| | | Sbjct 1784 GTCAGGAACCCAAAGAGCCATGAAAAGATCACGAGCTCT-AGTCTCTTCGGCGCCAGTGT 1726 Query 48280 TCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCA 48339 | | || || | || | || || || | |||||||| || || || || || | Sbjct 1725 TTTTGCGTAGCTCTACGAACTGCAGAATGTCTGGGTGCCATGGCTCCAAGTAAATCGCGA 1666 Query 48340 TTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTC 48399 |||||||||| || || || ||||| || | || | || || ||||| | || | Sbjct 1665 AGGCACCTGGTCGCTTGTTTCCACCTTGGTCGACGTACCGCGCTGTGTTGTTGAAGACGC 1606 Query 48400 TTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAG 48459 | ||||||||| | ||||| || ||||| ||||||| ||| || | || || | Sbjct 1605 GGAGCATTGGGACCAAGCCATTGGACTCTCCATTCGTTCCCGCTATAAAAGTACC-CTTG 1547 Query 48460 CT-CTTATATTACTAA--TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCAC 48516 || | ||| || |||| | || || ||||| || |||| ||||| || |||| Sbjct 1546 CTTCGGATACAGTGAACGTTGAGA--CCGATTCCACCAGCATTTTTCGATATAAGCGCAC 1489 Query 48517 ACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAAC 48576 || | || | ||||||||||| || || || || || || |||| | | || ||| Sbjct 1488 ACTGCTTCAATGTATCATAAATGCCCTCAATGCTGTCGTCCTTCATTGTGAGAAGGTAAC 1429 Query 48577 AACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAA 48636 |||| ||||| || || | || || | ||||| | ||| |||||||| ||| ||| Sbjct 1428 AACTGGACATCTGTGGCATAGGGGTCCCGGCGTTAAAAAGTGTGGGAGATGCGTGAGTAA 1369 Query 48637 ACCATTTC 48644 |||| ||| Sbjct 1368 ACCACTTC 1361 >seq38847 Length=4243 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 ||||| ||||||||| ||||||| || || ||||| || || || ||||| | |||| | Sbjct 1968 TACATCTCTGAATGA-TATTTTCGATTGCAATCTGGAAGCCATAGAAACAACGGGCTTTT 2026 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | ||||||| ||| || || | || || | ||||||||| |||||||| || || Sbjct 2027 GGGATCTGTAATTCCTGACTGAAGCGCTCCACAAGATTTTCATTTACTATTCCGTCGCTT 2086 Query 19375 GCTGCAAAAAATGC 19388 ||||||||||| || Sbjct 2087 GCTGCAAAAAAGGC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561123043850160