Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq42856 147 2e-29 seq1102 129 5e-24 seq91756 111 1e-18 seq58369 111 1e-18 seq11559 91.5 1e-12 >seq42856 Length=3867 Score = 147 bits (162), Expect = 2e-29 Identities = 385/581 (66%), Gaps = 10/581 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| || || || || || || ||||| ||||||| ||| |||| || || || Sbjct 403 GGTATCGACTTGGGCACTACGTACTCCTGTGTGGGTGTTTTCCAACATGGCAAGGTGGAG 462 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || || ||||| || || || ||| | || || || ||||| | ||||| || || Sbjct 463 ATCATCGCCAACGACCAGGGCAACCGCACAACACCCAGCTATGTGGCCTTCACCGACACC 522 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAATACT 550174 |||| | | | ||||| || || || | || | ||| || || || ||||| | | Sbjct 523 GAACGTCTCATCGGTGACGCCGCGAAGAACCAGGTGGCCA-TG--AACCCCACCAACAGT 579 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || ||||| || ||| | || || | | ||| ||||| ||||||| ||| ||| Sbjct 580 GTGTTCGATGCCAAGCGTCTGATCGGCCGCAAGTTTGATGATCCGACTGTGCAGCTCGAT 639 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACT 550294 |||||||| ||||| ||||| | | ||||| ||||| || | ||| | | Sbjct 640 ATGAAGCACTGGCCATTCCACGTAATCAATGTGGGCGGAAAGCCAAAGATTCAGG--TGG 697 Query 550295 CATG-AAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGA 550352 ||| |||| | | || | || | || || | || ||||||||||| | ||| Sbjct 698 AATGTAAGGGTGAGACGAAGACCTTCTTCCCCGAGGAGATCTCATCTATGGTGCTGTTGA 757 Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTG 550412 | ||||| | || ||| ||||| | || | || |||||||| || | |||| Sbjct 758 AGATGAAGGAGACGGCCGAAGCTTTCCTGGGCCGTCCGGTGACGGATGCGGTGGTTACTG 817 Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472 | || || || || |||||| || | || || || ||||||||||| |||| | | Sbjct 818 TTCCTGCCTACTTCAATGACGGTCAGAGACAGGCCACAAAAGATGCTGGCACTATTTCGG 877 Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 | || ||||| ||||| || ||||| || || ||||| || || |||| || || || | Sbjct 878 GCCTGAATGTGCTTCGCATCATCAACGAGCCGACTGCCGCAGCCATTGCCTACGGTCTGG 937 Query 550533 ATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 | || | || | |||| || || |||||||| ||| Sbjct 938 ACAAGAAGGTTGGTAGCGAACGCAACGTCCTCATCTTCGAT 978 Score = 129 bits (142), Expect = 5e-24 Identities = 458/712 (64%), Gaps = 8/712 (1%) Strand=Plus/Plus Query 551894 AGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTAC 551953 |||| | |||||||| | ||||| || || |||| || || |||| || || | Sbjct 1155 AGCTGTGCGTCGTCTGCGTACTGCATGTGAGCGAGCAAAGCGTACTCTGAGTTCCAGTGC 1214 Query 551954 TCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTC 552013 || ||| | |||| | || || | ||||||||||| || | | ||| | || | Sbjct 1215 ACAGGCCAATGTTGAGATTGACTCTCTGTTTGAGGGAATCGACTTCTACACGTCAATCAC 1274 Query 552014 GAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGA 552073 |||||| || || || | ||| ||| ||||| | || ||||| || || Sbjct 1275 GAGGGCTCGTTTCGAGGAGCTGTGTGGTGACCTCTTCCGTGGCACTCAAGAACCCGTGGA 1334 Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133 | | | | ||| | ||||| || ||| | || | || || | ||| | || || Sbjct 1335 GAAGGCCCTTCGCGATGCGAAGATGGACAAAGCACAAATTCACGAGGTGGTGTTGGTGGG 1394 Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAA 552191 ||||||||| | ||||| || |||| | || | ||| | | ||||| || || Sbjct 1395 TGGATCTACTCGTATTCCGAAGATTCAGAAGTTGCTGCAAGATTTC--TTCAACGGCAAG 1452 Query 552192 AAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCA 552251 || | ||| | | | | || ||||||||||||||||||||||| || || | || || Sbjct 1453 GAACTGAATAAGACTATCAACCCAGATGAGGCTGTTGCCTATGGAGCTGCGGTGCAGGCC 1512 Query 552252 GCTATTCTTTCTGG--ACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTA 552309 || ||||| || || |||| | |||| | || || || | || | || || Sbjct 1513 GCCATTCTGTCGGGTGACAAGC--ATGAGGTTGTGCAGGATCTTCTGCTGTTGGACGTGG 1570 Query 552310 CTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAA 552369 | || || || | ||||| || || | ||| || | ||||| | || ||| | ||| Sbjct 1571 CGCCGCTGTCGATGGGTTTGGAGACTGCTGGTGGAGTGATGACCACCCTGATCAAACGAA 1630 Query 552370 ATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTG 552429 | || || ||||| || | | | || | || || || || || || | | Sbjct 1631 ACACGACAATTCCAACGAAGCAGACGCAGACCTTCACCACTTACTCGGACAACCAGCCAG 1690 Query 552430 CTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTG 552489 || |||||| | | || || ||| || | | || || || || |||| | | Sbjct 1691 GCGTGCTGATTCAAGTGTACGAGGGTGAACGAGCAATGACGAAGGACAACAATCTGTTGG 1750 Query 552490 GTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTA 552549 | | ||| | ||| || ||||| || ||||||||||| |||||||| || ||||| | Sbjct 1751 GCAAGTTTGAGTTATCGGGAATTCCACCGGCTCCTCGTGGTGTACCGCAGATAGAAGTGA 1810 Query 552550 CTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 | |||||||| || ||||| || ||| ||||||| | || ||||| || || Sbjct 1811 CCTTCGATATTGACGCCAACGGCATTCTGAATGTTTCGGCGTGTGACAAGTC 1862 >seq1102 Length=24202 Score = 129 bits (142), Expect = 5e-24 Identities = 367/555 (66%), Gaps = 18/555 (3%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | || || || || || ||||| | || |||||||| | || |||| || Sbjct 3207 AGCTGTCGGAATCGACTTGGGTACCACCTTCTCCTGCGTTGGTGTCTTCCAGCATGGAAA 3148 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| |||||||| |||||||| || | || ||||| ||||| | ||||| Sbjct 3147 GGTAGAAATAATTGCCAACGATCAAGGCAATCGCACAACTCCTAGCTATGTCGCATTCAC 3088 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTAC 550167 || || || | || | || ||||| || | | || | ||| || || || | Sbjct 3087 TGACACGGAGCGCCTAATCGGGGATGCCGCTAGGAACCAGGTTGCCA-TG--AACCCGTC 3031 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 ||||| | ||||| || || || | || || || | ||| |||| | |||| || Sbjct 3030 GAATACCGTATTTGACGCCAAGCGCCTGATCGGCCGACGCTTTGATGACCCCGCTGTCCA 2971 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA 550287 | ||| |||||||||||| ||| || | ||| | ||| ||||| | || || Sbjct 2970 GAGTGATGCGAAGCATTGGCCCTTCACGGTTATCAATTCTGGTGGCAAACCAAAGATCGA 2911 Query 550288 AGC----TACTCATGAAG-GATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATG 550342 || ||| | || || || ||||||||| | ||| | || || || ||| Sbjct 2910 AGTGGAGTAC-CGTGGAGAGAAA----AAACAATTTAACGCCGAAGAGATCTCCTCAATG 2856 Query 550343 GTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGC 550401 || || ||||||||||| |||| || || | | || ||||| ||| || ||||| Sbjct 2855 GTGTTGGTGAAAATGAAAGAAACTGCGGAGGCCTACCTAGG-CAAGACAGTCACTGATGC 2797 Query 550402 AGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG 550461 || | ||||| || || ||||| ||||| |||||||| || || ||||| || || Sbjct 2796 GGTTGTCACTGTGCCTGCCTATTTCAATGATAGCCAACGTCAGGCCACGAAAGACGCCGG 2737 Query 550462 ACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGC 550521 | || | || ||||| ||| | || || || || ||||| || || ||||| | || Sbjct 2736 AACCATATCCGGTCTTAACGTTTTGCGCATCATTAACGAACCGACGGCCGCTGCGATAGC 2677 Query 550522 ATATGGACTTGATAA 550536 || ||||| || || Sbjct 2676 TTACGGACTCGACAA 2662 >seq91756 Length=1364 Score = 111 bits (122), Expect = 1e-18 Identities = 171/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 ||||||| || | || | || || || ||||| ||||||||||| || || ||| | Sbjct 981 TGTGTTGCCGTCTTCCAGCACGGAAAGGTAGAAATCATTGCCAATGACCAGGGCAACCGC 1040 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || || || |||||| | ||||| || || |||| | | |||| |||||||| ||| Sbjct 1041 ACAACGCCCAGCTATGTTGCCTTCACTGACACCGAACGTCTGATTGGAGATGCAGCGAAA 1100 Query 550145 TATCA--AGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202 |||| | || || ||||| | || || | |||||||| || ||| | || || | Sbjct 1101 AATCAGGTGGCAATG--AATCCCTCTAACACGGTGTTTGATGCGAAGCGTCTGATCGGCA 1158 Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTA 550262 || |||| ||||| || || ||| | || ||||| |||||||| ||| |||| || | Sbjct 1159 GACGTTTCGATGATCAGATGGTGCAGTCTGACATGAAACATTGGCCCTTCAAAATAGTGA 1218 Query 550263 AT 550264 || Sbjct 1219 AT 1220 >seq58369 Length=2743 Score = 111 bits (122), Expect = 1e-18 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| || || || ||||| || ||| ||||| |||||||||||||| || || | Sbjct 718 GAGCCGCAGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTACG 659 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||| || |||||||| || || || || |||||||||||||| || || || ||||| Sbjct 658 GCCATCCTCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTC 599 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGT 563435 ||| ||||| ||||| ||| || |||||| | ||| || | || || || Sbjct 598 TTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCGACCTCCAGGGT 539 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || |||||||| || || || || ||||| ||||| Sbjct 538 AATCGTCTTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 Score = 102 bits (112), Expect = 7e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| | || ||||| ||||| ||| || ||| ||||| || | |||||| | Sbjct 490 GAGACGCAAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAGAGTACG 431 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 |||||| ||||| || ||||| ||||| |||| || || || || || || || || Sbjct 430 ACCATCTTCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGGATCCCCTC 371 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGT 563435 |||||||||||||| || || |||||||| ||| || | || || || Sbjct 370 CTTATCTTGAATTTTAGCCTTCACGTTCTCAATTGAGTCACTGGGTTCGACCTCCAGGGT 311 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || |||||||| || || || ||||||||||| Sbjct 310 AATCGTCTTGCCAGTAAGTGTCTTCACAAAAATTTGCAT 272 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTA--CTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || || ||||| || ||| || | ||||| |||||||| || | || || | Sbjct 1173 AGACGCAGCACCAGATGCAGAGTAGACTCTTTTTGG--ATATTGTAGTCGGAGAGCGTGC 1116 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 |||||| |||||||| ||||| || || |||| ||| || || || || || || | Sbjct 1115 GGCCATCTTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGGATACCCT 1056 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434 |||||||||| || || || || ||||| | ||| || | || |||| Sbjct 1055 CTTTATCTTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTGGGTTCGACCTCCAGAG 996 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| ||||| || || | || |||||||| || ||||| Sbjct 995 TAATGGTTTTGCCTGTCAACGTCTTAACGAATATCTGCAT 956 >seq11559 Length=9825 Score = 91.5 bits (100), Expect = 1e-12 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || |||| || |||||||| |||||||| || || || | || || || | | Sbjct 2230 AAGTCACTCATGCTGTCATAACTGTGCCAGCATACTTCAACGATGCTCAGCGACAGTCAA 2289 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| ||||||||| || ||||| | || || ||||| ||||| || | Sbjct 2290 CAAAAGATGCTGGCGTTATTGCTGGTCTGAATGTGTTGCGGATAATCAACGAACCCACGG 2349 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 | || ||| |||| || ||| | || || Sbjct 2350 CAGCGGCAATTGCTTACGGATTGGACAA 2377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4021876620554060