Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq58369 125 6e-24 seq7124 122 7e-23 seq79732 89.7 4e-13 >seq58369 Length=2743 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || ||||| |||||||| |||||||| |||| || || | | |||| || | ||| Sbjct 1159 ATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGAGAGCGTGCGGCCATCTTCTAGTTG 1100 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||||| || ||||||| || ||||| || || || || || ||||||||||| || || Sbjct 1099 TTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGGATACCCTCTTTATCTTGGATCTT 1040 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| |||| | | |||| | ||| || || ||||| | |||||||| || Sbjct 1039 AGCCTTCACATTTTCAATGGAGTCACTGGGTTCGACCTCCAGAGTAATGGTTTTGCCTGT 980 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || || || || ||||||||||| Sbjct 979 CAACGTCTTAACGAATATCTGCAT 956 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || ||||| |||||||| ||||||||||| | || || | | |||| || | ||| Sbjct 703 ATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTACGGCCATCCTCGAGTTG 644 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||||| || || || | | || ||||| || || ||||||||||| ||||| ||||| Sbjct 643 TTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTCTTTGTCTTGGATTTT 584 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | || |||| | ||| || || || || | ||| || || || Sbjct 583 GGCTTTGACATTCTCAATAGAGTCACTGGGTTCGACCTCCAGGGTAATCGTCTTACCAGT 524 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 523 CAGGGTCTTCACAAAAATCTGCAT 500 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || | ||| ||||| ||||| ||||| || ||||| |||| | ||| | | Sbjct 487 ACGCAAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAGAGTACGACC 428 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||| || || || |||| |||||||| || || || || || || || Sbjct 427 ATCTTCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGGATCCCCTCCTT 368 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||||||| || || | || | | |||| | ||| || || || || | Sbjct 367 ATCTTGAATTTTAGCCTTCACGTTCTCAATTGAGTCACTGGGTTCGACCTCCAGGGTAAT 308 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||| ||||| || | || || ||||| || |||||| Sbjct 307 CGTCTTGCCAGTAAGTGTCTTCACAAAAATTTGCATG 271 >seq7124 Length=12460 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || || ||||| || |||||||| || | || || | | || ||| Sbjct 7544 ACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTCTGAGAGTGTGCGACCGTCCTCC 7485 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || |||||||| ||||| |||| ||||||||||| || ||||||||||| || || ||| Sbjct 7484 AACTGCTTACCAGCAAAGATCAGGCGCTGTTGATCTGGAGGAATGCCTTCCTTGTCCTGA 7425 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| |||||| | || | | ||| || |||||| || | ||| | || ||| Sbjct 7424 ATCTTTGCCTTTACATTCTCGATCGAGTCGCTCGGTTCCACCTCCAAAGTTATGGTCTTG 7365 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | || || ||||| ||||||||| Sbjct 7364 CCAGTCAGCGTCTTCACAAAGATCTGCATG 7335 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| | || || || ||||| || || || || |||||||| || | | Sbjct 7334 CCACCGCGTAGACGCAGTACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCCGAG 7275 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || |||| ||||| || ||||| |||| ||||| || || || ||| Sbjct 7274 AGTGTACGACCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGAGGA 7215 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| ||||| ||| || ||| |||| | || |||| || |||||| Sbjct 7214 ATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATAGAGTCACTCGGTTCCACC 7155 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || ||||| || | || || ||||| || ||||| Sbjct 7154 TCCAACGTGATGGTCTTGCCAGTCAGTGTCTTCACAAAGATTTGCAT 7108 >seq79732 Length=1757 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || || ||||| ||||| ||||| | | ||| | |||| || | || Sbjct 1165 TGAAGGGTGGACTCCTTTTGGATATTATAATCCGACAGAGTGCGTCCATCCTCAAGCTGT 1224 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | || || || || || || || || ||||| || ||||| || Sbjct 1225 TTGCCGGCGAAGATTAGCCGTTGCTGGTCTGGAGGGATACCCTCTTTGTCCTGAATCTTG 1284 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| |||| | | ||| || | || || || || || | || || || ||| Sbjct 1285 GCCTTTACATTTTCGATTGAGTCCGAAGGCTCAACCTCGAGGGTTATAGTCTTCCCTGTT 1344 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | ||||| ||||||||||||||| Sbjct 1345 AGGGTTTTGACAAATATCTGCATG 1368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395600830064958