Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq7124 132 4e-26 seq58369 111 1e-19 seq36647 107 1e-18 seq36821 93.3 3e-14 seq8609 93.3 3e-14 seq47691 89.7 4e-13 >seq7124 Length=12460 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || |||||| || |||||||| || || || | ||| Sbjct 7553 AGACGGAGCACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTCTGAGAGTGTGCGA 7494 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||||||||||||| ||||| ||||| ||||||||||| | |||| ||| ||| Sbjct 7493 CCGTCCTCCAACTGCTTACCAGCAAAGATCAGGCGCTGTTGATCTGGAGGAATGCCTTCC 7434 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| |||||| | | || || || |||||||||| || Sbjct 7433 TTGTCCTGAATCTTTGCCTTTACATTCTCGATCGAGTCGCTCGGTTCCACCTCCAAAGTT 7374 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || ||||| |||||||| Sbjct 7373 ATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 7336 >seq58369 Length=2743 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||||| ||||| ||| || || |||||||||||||||||||||||| || | || Sbjct 717 AGCCGCAGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTACGG 658 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || ||||| || || || |||| || ||||||| ||| | ||| || Sbjct 657 CCATCCTCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTCT 598 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || ||| ||| | | ||| || | || ||||||| ||| Sbjct 597 TTGTCTTGGATTTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCGACCTCCAGGGTA 538 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || || |||| || || ||||||||||||||| Sbjct 537 ATCGTCTTACCAGTCAGGGTCTTCACAAAAATCTGCATC 499 Score = 102 bits (112), Expect = 6e-17 Identities = 159/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||| |||||| || || |||||||| ||||| || |||||| | ||| Sbjct 489 AGACGCAAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAGAGTACGA 430 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCC-GTGGGAACGCCCTC 48667 | || || | ||||| ||||| || |||||||||||||| ||| |||||| | ||||| Sbjct 429 CCATCTTCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGGATC-CCCTC 371 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCA---CAGACTCTGACGCCTCCACCTCCAC 48724 ||| || ||| ||| | || | | || || | ||| | || ||||||| Sbjct 370 CTTATCTTGAAT-TTTAGCCTTCACGTTCTCAATTGAGTCACTG--GGTTCGACCTCCAG 314 Query 48725 CGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || || || | || || |||||||| ||||| Sbjct 313 GGTAATCGTCTTGCCAGTAAGTGTCTTCACAAAAATTTGCAT 272 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||| ||||| ||| || || ||||||||| |||||||| || || Sbjct 1182 CCGCCACGAAGACGCAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGAG 1123 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | || |||||||| ||||||||||| ||||| |||| ||| Sbjct 1122 AGCGTGCGGCCATCTTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGG 1063 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| || || ||||| || ||| | | || || | || ||| Sbjct 1062 ATACCCTCTTTATCTTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTGGGTTCGACC 1003 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| ||||| || ||||| || || || || |||||||| Sbjct 1002 TCCAGAGTAATGGTTTTGCCTGTCAACGTCTTAACGAATATCTGCAT 956 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || ||| ||| |||||||| || || ||||| || | || | || || Sbjct 252 ACCAGATGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGAGAGGGTGCGCCCATCTTCG 193 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || ||||| || |||||||||||||| || | || | ||||| ||||| Sbjct 192 AGTTGTTTGCCGGCGAAAATCAGTCGCTGTTGGTCTGGTGGTATCCCCTCTTTGTCTTGG 133 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | || || | ||| ||||||| || || ||||| Sbjct 132 ATCTTGGCTTTGACATTCTCGATCGAGTCACTAGGCTCGACCTCCAAAGTGATAGTTTTG 73 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || |||||||| || || || ||||||||| Sbjct 72 CCAGTCAAAGTCTTAACGAAGATCTGCATC 43 >seq36647 Length=4477 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || |||||||| ||||| || | || | || ||| Sbjct 4347 ACCAAGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGACAGCGTACGGCCATCTTCC 4288 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || || || ||||| ||||| || |||| |||| || ||||| || | Sbjct 4287 AACTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGAATACCTTCCTTATCCTGA 4228 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || ||| | | || || || ||||||||||| ||| || || || Sbjct 4227 ATCTTTGCCTTCACATTTTCGATCGAGTCACTCGGCTCCACCTCCAACGTGATGGTCTTG 4168 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| || || |||||||||||||| Sbjct 4167 CCAGTCAGGGTCTTCACAAAAATCTGCAT 4139 >seq36821 Length=4459 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||| ||| | || ||||||||| || ||||||||||| || | || Sbjct 1557 AGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGG 1498 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || |||||||| || || |||| |||||| || | ||| | || ||| Sbjct 1497 CCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCC 1438 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || || | ||| ||||| | ||| Sbjct 1437 TTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTA 1378 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || ||||| ||||| ||||| ||||||||| Sbjct 1377 ATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCATC 1339 >seq8609 Length=11408 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||| ||| | || ||||||||| || ||||||||||| || | || Sbjct 10440 AGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGG 10381 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || |||||||| || || |||| |||||| || | ||| | || ||| Sbjct 10380 CCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCC 10321 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || || | ||| ||||| | ||| Sbjct 10320 TTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTA 10261 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || ||||| ||||| ||||| ||||||||| Sbjct 10260 ATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCATC 10222 >seq47691 Length=3461 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 48585 ATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGC 48644 || ||||| || || | | | |||||| | |||||||||| | ||||||||| ||| Sbjct 2726 ATCTTGTAGTCTGACAATGTACAATCGTCCTGCAACTGCTTATCATTAAATATCAGGCGC 2667 Query 48645 TGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGAC 48704 | | |||| ||||||||||||| ||| ||||||| ||||| | || | || Sbjct 2666 AGCCGGTCCGAAGGAACGCCCTCCTGGTCCTGAATCTTTGCTTTTAAATTCCCTATCGAA 2607 Query 48705 TCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGC 48764 || | ||| ||||||| || ||||| || || | | | || || ||||| |||||| Sbjct 2606 TCATCTGGCTCAACCTCCAGCGGTATCGTCTTGCCAGACGACGTCTTCACAAAGATCTGC 2547 Query 48765 ATCG 48768 |||| Sbjct 2546 ATCG 2543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380286260272962