Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq31935 104 4e-17 seq36919 91.5 3e-13 >seq31935 Length=5035 Score = 104 bits (114), Expect = 4e-17 Identities = 165/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 213820 GCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCA 213879 |||| || | ||| || ||||| || || |||| || || | | || |||| || Sbjct 1794 GCATAAATAAGTCAGGAACCCAAAGAGCCATGAAAAGATCACGAGCTCTAGTCTCTTCGG 1735 Query 213880 CTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGT 213939 | |||| ||||||||| || |||| || | | ||||| | |||||| ||||||| || Sbjct 1734 CGCCAGTGTTTTTGCGTAGCTCTACGAACTGCAGAATGTCTGGGTGCCATGGCTCCAAGT 1675 Query 213940 AGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGT 213996 | || || ||||| || || | |||| || || ||||| || || || ||| Sbjct 1674 AAATCGCGAAGGCACCTGGTCGCTTGTTTCCACCTTGGTCGACGTACCGCGCTGTGTTGT 1615 Query 213997 TGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATA 214052 |||||| ||| || | || |||| || ||||||| ||| || |||||||||||| Sbjct 1614 TGAAGACGCGGAGCATTGGGACCAAGCCATTGGACTCTCCATTCGTTCCCGCTATA 1559 >seq36919 Length=4449 Score = 91.5 bits (100), Expect = 3e-13 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 |||||||| || || | ||| || || || |||||||| || ||||| | ||| || Sbjct 2200 TACATCTCTGAATGAATATTTTCGATTGCAATCTGGAAGCCATAGAAACAGCGGGCTTCT 2141 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 | ||| |||||| ||| || ||| ||||| ||||| ||||| || || Sbjct 2140 GGGATCTGTACTTCTTGACTGAAGTTCGCCACAAGATTTTCATTTACTATTCCGTCGCTT 2081 Query 48545 GCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTC 48604 || ||||| ||||||||||| | | || ||| || |||| || | |||| | | Sbjct 2080 GCGGCAAAAAAGGCAAGGACGTATGAAATGAAGTGCTTCTCGCCGTCCTTTAGAGATTCC 2021 Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664 ||| | | |||||| ||| ||| |||||||| || ||||| || || || | ||| Sbjct 2020 CAGTCACCAAGGTCTTTCGCCAAGTCAACTTCTTCAACGGTCCAAAATGAAGCCACCGCT 1961 Query 48665 TTTTTGTA 48672 || ||||| Sbjct 1960 TTCTTGTA 1953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929899194216960