Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1102 206 2e-47 seq61391 172 4e-37 seq91756 107 1e-17 seq58369 89.7 3e-12 >seq1102 Length=24202 Score = 206 bits (228), Expect = 2e-47 Identities = 349/499 (70%), Gaps = 6/499 (1%) Strand=Plus/Minus Query 474381 ATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTT 474440 |||| || ||||||||||||||||| || ||||| ||| | ||||| || ||||| Sbjct 3154 ATGGAAAGGTAGAAATAATTGCCAACGATCAAGGCAATCGCACAACTCCTAGCTATGTCG 3095 Query 474441 CTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATC 474500 | || ||||| || || | || || || ||||| |||| | || | ||| || | Sbjct 3094 CATTCACTGACACGGAGCGCCTAATCGGGGATGCCGCTAGGAACCAGGTTGCCATGAACC 3035 Query 474501 CTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTG 474560 | ||||| | ||||| || || | |||| || || |||||||| || ||| Sbjct 3034 CGTCGAATACCGTATTTGACGCCAAGCGCCTGATCGGCCGACGCTTTGATGACCCCGCTG 2975 Query 474561 TCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATA 474620 |||| |||| | |||||||| || | ||| || ||| |||||| |||||| | | Sbjct 2974 TCCAGAGTGATGCGAAGCATTGGCCCTTCACGGTTATCAATTCTGGTGGCAAACCAAAGA 2915 Query 474621 TAGAA--GCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAAT 474678 | ||| | | ||| || || || | ||||||||| | ||| | || || ||||| Sbjct 2914 TCGAAGTGGAGTAC-CG-TGGAGAGAAAAAACAATTTAACGCCGAAGAGATCTCCTCAAT 2857 Query 474679 GGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGA-AGTAACTGATG 474737 ||| || | ||||||||| |||| ||| | || || || ||||| ||| ||||||| Sbjct 2856 GGTGTTGGTGAAAATGAAAGAAACTGCGGAGGCCTACCTAGG-CAAGACAGTCACTGATG 2798 Query 474738 CAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGG 474797 | || | ||||| || || ||||| |||||| |||||||| || || ||||| || | Sbjct 2797 CGGTTGTCACTGTGCCTGCCTATTTCAATGATAGCCAACGTCAGGCCACGAAAGACGCCG 2738 Query 474798 GAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTG 474857 ||| || | |||||||| ||||| || || ||||| ||||| || || || || | | Sbjct 2737 GAACCATATCCGGTCTTAACGTTTTGCGCATCATTAACGAACCGACGGCCGCTGCGATAG 2678 Query 474858 CTTATGGTCTTGATAAGAA 474876 |||| || || || ||||| Sbjct 2677 CTTACGGACTCGACAAGAA 2659 >seq61391 Length=2572 Score = 172 bits (190), Expect = 4e-37 Identities = 371/546 (68%), Gaps = 8/546 (1%) Strand=Plus/Minus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || || ||| | || || |||| | ||||| | |||| ||| | || || |||||| Sbjct 1463 GGAATCGATCTCGGCACGACTTTCTCATGTGTTGGCGTTTTCCAACACGGAAAGGTAGAA 1404 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 ||||| ||||||||||| ||||| | ||||| || |||||| | || ||||| || Sbjct 1403 ATAATCGCCAATGACCAGGGTAACCGCACAACGCCCAGCTATGTTGCCTTCACTGACACC 1344 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 |||| ||| ||||||||||| || ||| |||| | ||| ||||| ||| || | Sbjct 1343 GAACGTCTGATTGGAGATGCAGCGAAAAATCAGGTGGCAATGAATCCCTCTAACACGGTG 1284 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 || || || || | |||| || | |||||| ||| | || || || || || ||| Sbjct 1283 TTCGACGCGAAGCGCCTGATCGGCAGACGTTTTGACGATCCGACGGTGCAGTCCGACATG 1224 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG--CAATAC 474632 || ||||| || | | | ||| ||||| || || | || |||| |||| Sbjct 1223 AAACACTGGCCGTTCACTATAGTGAATTCGGGTGGAAAGCCGAAGATTGAAGTTGAATA- 1165 Query 474633 ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAA 474692 || || || | |||||||| | || | || || || ||||| | | || | Sbjct 1164 TCG-TGGAGAGAAGAAACAATTCAGTGCCGAGGAGATCTCCTCTATGGTGCTGGTGAAGA 1106 Query 474693 TGAAACAAACCGC-GAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTAATTACTGT 474750 |||| | || || ||| | || ||||| |||||| || | |||||| || | || || Sbjct 1105 TGAAGGAGACGGCTGAG-GCGTA-CTTGGGCAAGAAGGTGAATGATGCGGTGGTCACAGT 1048 Query 474751 TCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGG 474810 || || || || || ||| |||||||| || ||||| || || || | ||| | || Sbjct 1047 GCCTGCTTACTTCAACGATAGCCAACGTCAGGCGACTAAGGACGCTGGTACGATTTCGGG 988 Query 474811 TCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGA 474870 | || || || ||||| ||||||||||||||||| || || |||| || ||||| || Sbjct 987 CATGAACGTGTTGCGTATCATTAATGAACCAACAGCTGCTGCCATTGCCTACGGTCTGGA 928 Query 474871 TAAGAA 474876 ||||| Sbjct 927 CAAGAA 922 >seq91756 Length=1364 Score = 107 bits (118), Expect = 1e-17 Identities = 270/403 (67%), Gaps = 7/403 (2%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | || || ||| | || || || | | ||||| || || | || | || || Sbjct 948 GCAGTCGGAATCGATCTCGGCACGACCTTCTCGTGTGTTGCCGTCTTCCAGCACGGAAAG 1007 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 |||||||| |||||||||||||| || || | ||||| || |||||| | || ||| Sbjct 1008 GTAGAAATCATTGCCAATGACCAGGGCAACCGCACAACGCCCAGCTATGTTGCCTTCACT 1067 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || |||| ||| ||||||||||| || ||| |||| | ||| ||||| ||| Sbjct 1068 GACACCGAACGTCTGATTGGAGATGCAGCGAAAAATCAGGTGGCAATGAATCCCTCTAAC 1127 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | |||||||| || | |||| || | ||| |||||| | || || ||| Sbjct 1128 ACGGTGTTTGATGCGAAGCGTCTGATCGGCAGACGTTTCGATGATCAGATGGTGCAGTCT 1187 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-- 474626 || ||| |||||||| || || | | ||| ||||| || ||| | | |||| Sbjct 1188 GACATGAAACATTGGCCCTTCAAAATAGTGAATTCGGGTGGAAAGCCAAAGGTTGAAGTT 1247 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 |||| || || || | |||||||| | || | || || || ||||| || | Sbjct 1248 GAATA-TCG-TGGGGAGAAGAAACAATTCAGTGCTGAGGAGATCTCCTCTATGGTGTTGG 1305 Query 474687 CCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAG 474728 || ||||| | || || ||| |||| ||||| ||||||| Sbjct 1306 TGAAGATGAAGGAGACGGCTGAG-GCATA-CTTGGGCAAGAAG 1346 >seq58369 Length=2743 Score = 89.7 bits (98), Expect = 3e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || ||||| || ||| ||||| | ||| || || | || || Sbjct 1177 ACGAAGACGCAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGAGAGCGT 1118 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| ||||| || || || || || || |||||||| || || || || || Sbjct 1117 GCGGCCATCTTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGGATACC 1058 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 || || ||||| ||||| || ||| |||||| | ||| || || || || Sbjct 1057 CTCTTTATCTTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTGGGTTCGACCTCCAG 998 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||| || || | ||||||||||| || || Sbjct 997 AGTAATGGTTTTGCCTGTCAACGTCTTAACGAATATCTG 959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3262161309633512