Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq58369 104 4e-17 seq36821 104 4e-17 seq8609 104 4e-17 seq73473 89.7 9e-13 >seq58369 Length=2743 Score = 104 bits (114), Expect = 4e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || | ||| || | || | ||| | ||||| |||||| ||||| || || || Sbjct 1182 CCGCCACGAAGACGCAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGAG 1123 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | || || | ||||||||| || || || | || |||||||| || || Sbjct 1122 AGCGTGCGGCCATCTTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGG 1063 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT--AGTATCTGACGATTCTA 172020 || || ||||||||||| || ||| || ||||| || ||| ||| | ||| | Sbjct 1062 ATACCCTCTTTATCTTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTG--GGTTCGA 1005 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 | || |||||||||||||| || || || || |||| ||||||||||||| Sbjct 1004 CCTCCAGAGTAATGGTTTTGCCTGTCAACGTCTTAACGAATATCTGCATT 955 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | ||||| |||||| |||||| ||||| Sbjct 729 ATGCCACCGCGGAGCCGCAGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCA 670 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | |||||||||||| || || | ||| || || || || Sbjct 669 GAGAGCGTACGGCCATCCTCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGG 610 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| ||| ||||| |||| || | ||| Sbjct 609 GGGATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCG 550 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| || |||||||| | || || | || |||||||| Sbjct 549 ACCTCCAGGGTAATCGTCTTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 >seq36821 Length=4459 Score = 104 bits (114), Expect = 4e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | || || || || | ||| || |||| |||||| || || ||||| || Sbjct 1567 ACCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGA 1508 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | || || | ||||||||| || || |||| |||||||||||| || || Sbjct 1507 GAGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGG 1448 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT--AGTATCTGACGATTCT 172019 |||||||| || || || || ||| || ||||| || ||| ||| | || Sbjct 1447 GATTCCTTCCTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTG--GGCTCA 1390 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||||||||| || || ||||| || ||||| | || |||||||| Sbjct 1389 ACCTCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 104 bits (114), Expect = 4e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | || || || || | ||| || |||| |||||| || || ||||| || Sbjct 10450 ACCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGA 10391 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | || || | ||||||||| || || |||| |||||||||||| || || Sbjct 10390 GAGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGG 10331 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT--AGTATCTGACGATTCT 172019 |||||||| || || || || ||| || ||||| || ||| ||| | || Sbjct 10330 GATTCCTTCCTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTG--GGCTCA 10273 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||||||||| || || ||||| || ||||| | || |||||||| Sbjct 10272 ACCTCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 >seq73473 Length=1996 Score = 89.7 bits (98), Expect = 9e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || ||||| | |||| ||| || || || ||||| Sbjct 1633 ATGCCACCACGGAGACGCAGGACCAAATGCAGTGTAGACTCCTTCTGGATGTTGTAATCA 1574 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| || | ||||||||| || ||||| |||| || ||||| ||| Sbjct 1573 GAGAGGGTGCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAATCGTTGCTGGTCTGGT 1514 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| || | || ||| || ||||| || | || | ||| Sbjct 1513 GGGATTCCCTCTTTGTCCTAAATCTTAGCCTTGACATTCTCGATCGAGTCGCTAGGTTCA 1454 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCA 172068 || ||||||||||| ||||| ||||| || || || | || ||||||| Sbjct 1453 ACCTCTAGAGTAATAGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCA 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903548685625200