Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq7124 120 3e-22 seq58369 118 1e-21 seq36821 111 1e-19 seq8609 111 1e-19 seq73473 104 2e-17 >seq7124 Length=12460 Score = 120 bits (132), Expect = 3e-22 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || || | || || ||| | | | Sbjct 7336 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATAACTTTGGAGGTGGAACCGAGC 7395 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | ||||| |||||| || ||||| ||||| || ||||| |||||| Sbjct 7396 GACTCGATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGATCAA 7455 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTATA 24881 || || |||||||||| || || ||| ||||||| ||| | || | ||||| || | Sbjct 7456 CAGCGCCTGATCTTTGCTGGTAAGCAGTTGGAGGACGGTCG-CACAC-TCTCAGACTACA 7513 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 | || || || || ||||| || ||||||||| | || |||| || || Sbjct 7514 ATATCCAGAAAGAGTCGACTCTGCACTTGGTGCTCCGTCTGCGTGGTGG 7562 Score = 107 bits (118), Expect = 2e-18 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 24702 CGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA 24761 ||||||| |||||| | || || || || || || || || ||| | || || ||| | | Sbjct 7106 CGATGCAAATCTTTGTGAAGACACTGACTGGCAAGACCATCACGTTGGAGGTGGAACCGA 7165 Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||| | | |||| || || |||||| || || || ||||| || ||||| || | Sbjct 7166 GTGACTCTATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCAGACC 7225 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTA 24879 | || || |||||||||| || || ||||||||||| ||| | || | || || || Sbjct 7226 AGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGTCG-TACAC-TCTCGGACTA 7283 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| ||||| || |||||||| |||| | ||||| ||| Sbjct 7284 CAATATCCAGAAGGAGTCGACCCTGCACTTGGTACTGCGTCTACGCGGTGGC 7335 >seq58369 Length=2743 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || ||||| || ||||| | || || ||| ||| Sbjct 728 ATGCAAATCTTTGTAAAGACCCTGACTGGTAAGACGATTACTTTGGAGGTCGAACCCAGT 787 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || || ||||||||||| || ||||| || || || || ||| Sbjct 788 GACTCGATCGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCGGACCAA 847 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| ||||| || || ||| | | | | || || || ||| Sbjct 848 CAGCGACTGATCTTCGCCGGTAAACAACTCGAAGATGGCCGCACCCTTTCTGACTACAAC 907 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || |||||||||||||| || || |||| ||||| Sbjct 908 ATCCAAAAGGAATCGACTCTCCATCTGGTCTTGCG 942 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || || ||||| || ||||| || || || ||| ||| Sbjct 499 GATGCAGATTTTTGTGAAGACCCTGACTGGTAAGACGATTACCCTGGAGGTCGAACCCAG 558 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || ||| || ||||||||||||||||| || || || ||||| Sbjct 559 TGACTCTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATCCCCCCGGATCA 618 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | ||||| || || ||||| || |||||| | | | || ||||| || Sbjct 619 GCAAAGACTCATCTTCGCTGGTAAACAACTCGAGGATGGCCGTACGCTCTCTGATTACAA 678 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||| || || || || || ||||| |||| | ||||| ||| Sbjct 679 TATTCAAAAAGAGTCTACTCTGCATCTGGTGCTGCGGCTCCGCGGTGGC 727 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| |||| || | || || |||||||| || | || || || | | Sbjct 43 GATGCAGATCTTCGTTAAGACTTTGACTGGCAAAACTATCACTTTGGAGGTCGAGCCTAG 102 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || ||| ||||||||||||||||| || ||||| || || || Sbjct 103 TGACTCGATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGGATACCACCAGACCA 162 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| || |||| || ||||| ||||| || || ||| | | | | | || || ||||| Sbjct 163 ACAGCGACTGATTTTCGCCGGCAAACAACTCGAAGATGGGCGCACCCTCTCTGACTATAA 222 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||||||| || || || || |||| Sbjct 223 CATTCAAAAGGAGTCCACTCTGCATCTGGT 252 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || |||| ||| | || || ||||| ||||| || || || ||| ||| Sbjct 956 ATGCAGATATTCGTTAAGACGTTGACAGGCAAAACCATTACTCTGGAGGTCGAACCCAGT 1015 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || || ||||||||||| ||||| || || || || || ||| Sbjct 1016 GACTCCATTGAAAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATCCCCCCGGACCAA 1075 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||| || ||||| ||||| || || ||| | | | || || || || Sbjct 1076 CAACGACTGATATTCGCCGGTAAACAACTAGAAGATGGCCGCACGCTCTCCGACTACAAT 1135 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || ||||| || || || || || ||||| |||| Sbjct 1136 ATCCAAAAAGAGTCTACTCTGCATCTGGTGCTGCG 1170 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || || || || || ||||| || || || ||| ||| Sbjct 272 ATGCAAATTTTTGTGAAGACACTTACTGGCAAGACGATTACCCTGGAGGTCGAACCCAGT 331 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | || |||| || | ||| || ||||| || || || || || || || || Sbjct 332 GACTCAATTGAGAACGTGAAGGCTAAA-ATTCAAGATAAGGAGGGGATCCCACCGGACCA 390 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| || |||| || ||||| || || || || ||| | | | || || || || Sbjct 391 ACAGCGACTGATTTTCGCCGGCAAGCAACTCGAAGATGGTCGTACTCTATCCGACTACAA 450 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||||||||||||| || ||||| |||| ||||| Sbjct 451 CATTCAAAAGGAATCAACCCTACATCTGGTCTTGCG 486 >seq36821 Length=4459 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| | || || || |||||||| || || || || ||| Sbjct 1339 GATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACTATTACTCTAGAGGTTGAGCCCAG 1398 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||| | | || | || || |||||||| ||||| |||||||| || || || || Sbjct 1399 CGACTCGATTGAGAATGTTAAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCA 1458 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | ||||| ||||| ||||| || |||||| | | | || ||||| || Sbjct 1459 ACAGAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAA 1518 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| ||||| || || ||| | || |||| ||||| Sbjct 1519 CATCCAAAAAGAGTCTACATTGCATCTGGTCTTGCG 1554 >seq8609 Length=11408 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| | || || || |||||||| || || || || ||| Sbjct 10222 GATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACTATTACTCTAGAGGTTGAGCCCAG 10281 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||| | | || | || || |||||||| ||||| |||||||| || || || || Sbjct 10282 CGACTCGATTGAGAATGTTAAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCA 10341 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | ||||| ||||| ||||| || |||||| | | | || ||||| || Sbjct 10342 ACAGAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAA 10401 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| ||||| || || ||| | || |||| ||||| Sbjct 10402 CATCCAAAAAGAGTCTACATTGCATCTGGTCTTGCG 10437 >seq73473 Length=1996 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24705 TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCG 24764 ||||||| ||| | || ||| | || || ||||||||||| || || || ||| | | || Sbjct 1405 TGCAGATTTTTGTGAAGACGTTGACTGGCAAAACTATTACTCTAGAGGTTGAACCTAGCG 1464 Query 24765 ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAAC 24824 || | | || | || || ||||| | |||||||| ||||| || || || || | Sbjct 1465 ACTCGATCGAGAATGTCAAGGCTAAGATTTAGGACAAAGAGGGAATCCCACCAGACCAGC 1524 Query 24825 AACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACA 24884 |||| || || || ||||| ||||| || || || | | | | || ||||| |||| Sbjct 1525 AACGATTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGCACCCTCTCTGATTACAACA 1584 Query 24885 TTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 | || ||||| || ||||| || ||||| |||| | || || ||| Sbjct 1585 TCCAGAAGGAGTCTACACTGCATTTGGTCCTGCGTCTCCGTGGTGGC 1631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449108625826320