Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq17644 147 3e-29 seq46662 127 3e-23 seq35011 87.8 3e-11 >seq17644 Length=7709 Score = 147 bits (162), Expect = 3e-29 Identities = 173/231 (75%), Gaps = 10/231 (4%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||||||||| ||||| |||||||| ||| ||||||| || || ||| Sbjct 3404 TGTACTTAGTGACGGCCTTGGTGCCCTCAGAGACGGCATGCTTGGCCAGCTCACCCGGCA 3345 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTC---GCGGGTGCCGATCGTGTTGCGCTTGTT-- 1485584 || ||| | ||||||||||||||||| || |||| | ||| || |||||| Sbjct 3344 GGAGCAGCCTGACGGCGGTCTGGATCTCTCTGCTGGTGATGGTCGACTT---CTTGTTGT 3288 Query 1485585 AGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGA 1485644 |||| | | ||||||| | ||| | | |||| | |||| |||||||| || || || Sbjct 3287 AGTGGGAG--AGGCGGCTAGACTCCGCGGCGATTCTCTCGAAGATGTCGTTCACGAAGGA 3230 Query 1485645 GTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 ||||||||| ||||| | || |||||||| ||||||||| ||||| Sbjct 3229 GTTCATGATGGACATGGCCTTCGATGAGATGCCGGTGTCGGGGTGAACCTG 3179 >seq46662 Length=3539 Score = 127 bits (140), Expect = 3e-23 Identities = 175/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||||||||| ||||| |||||||| ||| ||||||| || || ||| Sbjct 382 TGTACTTAGTGACGGCCTTGGTGCCCTCAGAGACGGCATGCTTGGCCAGCTCACCCGGCA 441 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 || || | ||||| ||||||||||| | | || || || ||| | |||| Sbjct 442 GGAGAAGCCTGACGGCAGTCTGGATCTCTCTGCTGGTAATGGTAGACTTCTTATTGTAGT 501 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | | | ||||| | | ||| | | |||| | |||| |||||||| || || ||||| Sbjct 502 GAGAG--AGGCGACTAGACTCCGCGGCGATTCTCTCGAAGATGTCGTTCACGAAGGAGTT 559 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | || ||||||||| || ||||| ||||| ||| ||||| Sbjct 560 CATGATGGACATAGCCTTCGAGGAGATGCCAGTATCAGGGTGGACCTGACGGAGGACCTT 619 Query 1485708 GTA 1485710 ||| Sbjct 620 GTA 622 >seq35011 Length=4652 Score = 87.8 bits (96), Expect = 3e-11 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 1485494 CCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGA 1485553 |||| |||||||| ||| ||||||| || || ||| || || | ||||| ||||||| Sbjct 3152 CCTCAGAGACGGCATGCTTGGCCAGCTCACCCGGCAGGAGAAGCCTGACGGCTGTCTGGA 3093 Query 1485554 TCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGTGCGCGCCAGGCGGCCGGCCTCGGT 1485611 |||| | | || || || |||||| |||| | | || |||| || || | Sbjct 3092 TCTCTCTGCTGGTAATGGTAGACTTCTTGTTGTAGTGAGAG--AGACGGCTGGATTCCGC 3035 Query 1485612 GCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGA 1485671 | |||| | |||| |||||||| || || ||||||||||| ||||| | || || Sbjct 3034 GGCGATTCTCTCGAAGATGTCGTTCACGAAAGAGTTCATGATGGACATGGCCTTCGATGA 2975 Query 1485672 GATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||| || || ||||| ||||| ||| |||||||| Sbjct 2974 GATACCAGTATCAGGGTGGACCTGACGGAGGACCTTGTA 2936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7901322687339066