Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq58369 145 5e-30 seq79732 129 4e-25 seq36647 107 1e-18 seq36821 95.1 8e-15 seq8609 95.1 8e-15 seq7124 95.1 8e-15 seq73473 93.3 3e-14 >seq58369 Length=2743 Score = 145 bits (160), Expect = 5e-30 Identities = 164/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| |||||||| || | ||| |||||| |||||||||||||| || ||| ||||| | Sbjct 259 CCTGAGGACCAGATGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGAGAGGGTGCGCCC 200 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| || ||||| || |||||||| |||||||| || |||||| | || | |||||| || Sbjct 199 ATCTTCGAGTTGTTTGCCGGCGAAAATCAGTCGCTGTTGGTCTGGTGGTATCCCCTCTTT 140 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTT 34939 ||| | || || |||||| || || ||||| ||| | | |||||| || | || Sbjct 139 GTCTTGGATCTTGGCTTTGAC--ATTCTCGATCGAGTCACTAGGCTCGACCTCCAAAGTG 82 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || || | ||||| || ||||||||||| Sbjct 81 ATAGTTTTGCCAGTCAAAGTCTTAACGAAGATCTGCAT 44 Score = 125 bits (138), Expect = 5e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| || ||||| ||||| || ||| |||| |||| || ||||| || ||||||||| Sbjct 918 TCCTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCGAGTTGTTTACCGGCGAAG 859 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||||||| || ||||| | || | || ||||| || | || || ||||| | Sbjct 858 ATCAGTCGCTGTTGGTCCGGGGGGATACCTTCCTTATCTTGGATCTTGGCCTTGACATTT 799 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | ||||| ||| ||| ||||| || | || || ||||| || || |||||||||||| Sbjct 798 TCGATCGAGTCACTGGGTTCGACCTCCAAAGTAATCGTCTTACCAGTCAGGGTCTTTACA 739 Query 34967 AAGATCTGCATG 34978 ||||| |||||| Sbjct 738 AAGATTTGCATG 727 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||| || | || ||| || || || || ||||| || || |||| |||| Sbjct 1168 CAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGAGAGCGTGCGGCCATC 1109 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| || |||||||| ||||||||||| ||||| | || | ||||| || || Sbjct 1108 TTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGGATACCCTCTTTATC 1049 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || | | || || ||| ||| ||||| || | || ||||| Sbjct 1048 TTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTGGGTTCGACCTCCAGAGTAATGGT 989 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| || || |||||||| Sbjct 988 TTTGCCTGTCAACGTCTTAACGAATATCTGCAT 956 >seq79732 Length=1757 Score = 129 bits (142), Expect = 4e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || ||||||||||||| |||| |||||| || || ||||| ||||| || |||| || Sbjct 1153 CTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATATTATAATCCGACAGAGTGCGTCCA 1212 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || || || || ||||||||||| || |||||||||||| | || | ||||| ||| Sbjct 1213 TCCTCAAGCTGTTTGCCGGCGAAGATTAGCCGTTGCTGGTCTGGAGGGATACCCTCTTTG 1272 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | | || || || | ||| || || | |||||| Sbjct 1273 TCCTGAATCTTGGCCTTTACATTTTCGATTGAGTCCGAAGGCTCAACCTCGAGGGTTATA 1332 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || ||||| || ||||| ||||||||| Sbjct 1333 GTCTTCCCTGTTAGGGTTTTGACAAATATCTGCATG 1368 >seq36647 Length=4477 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || ||||| || || | || |||| |||| ||||| || ||||| Sbjct 4330 CTCCTTCTGGATATTGTAGTCAGACAGCGTACGGCCATCTTCCAACTGCTTGCCAGCGAA 4271 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| || |||||||| | || | || ||||| || | || ||| || || Sbjct 4270 GATCAGACGCTGCTGGTCCGGAGGAATACCTTCCTTATCCTGAATCTTTGCCTTCACATT 4211 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | ||||| ||| | | ||| || || | || |||||||| || || |||||||| || Sbjct 4210 TTCGATCGAGTCACTCGGCTCCACCTCCAACGTGATGGTCTTGCCAGTCAGGGTCTTCAC 4151 Query 34966 AAAGATCTGCAT 34977 ||| |||||||| Sbjct 4150 AAAAATCTGCAT 4139 >seq36821 Length=4459 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || |||||| || | || ||| || || ||||| || || || || |||| |||| Sbjct 1552 CAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCATC 1493 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| || ||||||||||| |||| || |||||| | || | || |||||||| Sbjct 1492 CTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTGTC 1433 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || ||||| || ||| ||| || || | || || Sbjct 1432 CTGGATCTTAGCCTTAAC--ATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATA 1375 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || | ||| || |||||||||||||| Sbjct 1374 GTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || |||||| || | || ||| || || ||||| || || || || |||| |||| Sbjct 10435 CAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCATC 10376 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| || ||||||||||| |||| || |||||| | || | || |||||||| Sbjct 10375 CTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTGTC 10316 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || ||||| || ||| ||| || || | || || Sbjct 10315 CTGGATCTTAGCCTTAAC--ATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATA 10258 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || | ||| || |||||||||||||| Sbjct 10257 GTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 >seq7124 Length=12460 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| || || ||||| || || |||| | || |||| ||||| || || || Sbjct 7527 CTCTTTCTGGATATTGTAGTCTGAGAGTGTGCGACCGTCCTCCAACTGCTTACCAGCAAA 7468 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| || || || ||| | || | || |||||||| | || ||| || || | Sbjct 7467 GATCAGGCGCTGTTGATCTGGAGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTTAC--A 7410 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || ||||| || | | || || || | ||||||||||| || || || ||||| Sbjct 7409 TTCTCGATCGAGTCGCTCGGTTCCACCTCCAAAGTTATGGTCTTGCCAGTCAGCGTCTTC 7350 Query 34964 ACAAAGATCTGCATG 34978 ||||||||||||||| Sbjct 7349 ACAAAGATCTGCATG 7335 >seq73473 Length=1996 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| || | || ||||||||| ||||| || || || ||| |||| | || Sbjct 1616 CAGGACCAAATGCAGTGTAGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCGTC 1557 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| || |||||||| || | ||||||||||||| | || | ||||| ||||| Sbjct 1556 TTCGAGTTGTTTACCGGCGAAAATGAATCGTTGCTGGTCTGGTGGGATTCCCTCTTTGTC 1497 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || ||||| || | | || || || | || || Sbjct 1496 CTAAATCTTAGCCTTGAC--ATTCTCGATCGAGTCGCTAGGTTCAACCTCTAGAGTAATA 1439 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 || || || || | ||||| ||||| ||||||| || Sbjct 1438 GTTTTGCCAGTCAACGTCTTCACAAAAATCTGCACGA 1402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325135919661986