Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq42856 188 5e-42 seq61391 159 3e-33 seq91756 123 2e-22 seq11559 98.7 7e-15 seq6225 91.5 1e-12 >seq42856 Length=3867 Score = 188 bits (208), Expect = 5e-42 Identities = 951/1501 (63%), Gaps = 12/1501 (1%) Strand=Plus/Minus Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440 || || || ||||| || || || ||| || || || ||| || | ||||| ||| Sbjct 1895 TTGGTGATGGTAATCTTGTTCGACTTGCCCGTGGACTTGTCACACGCCGAAACATTCAGA 1836 Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || || ||||| || | ||| || || ||||| || || || || || | |||| ||| Sbjct 1835 ATGCCGTTGGCGTCAATATCGAAGGTCACTTCTATCTGCGGTACACCACGAGGAGCCGGT 1776 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 || || || || | ||| | |||| ||| || || || || | | ||||||| Sbjct 1775 GGAATTCCCGATAACTCAAACTTGCCCAACAGATTGTTGTCCTTCGTCATTGCTCGTTCA 1716 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||| | | ||| || || | | || || || || ||||| || || |||| Sbjct 1715 CCCTCGTACACTTGAATCAGCACGCCTGGCTGGTTGTCCGAGTAAGTGGTGAA-GGTCTG 1657 Query 281621 -GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 | | || |||||||| ||||||| | || | ||||||| | |||||||| Sbjct 1656 CGTCTGCTTCGTTGGAATTGTCGTGTTTCGTTTGATCAGGGTGGTCATCACTCCACCAGC 1597 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 281739 || || ||||| | || || || | || || | || | || || || | || Sbjct 1596 AGTCTCCAAACCCATCGACAGCGGCGCCACGTCCAACAGCAGAAGATCCTGCACAACCTC 1537 Query 281740 ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATC 281799 || | | ||| ||||| || || || | ||||| ||||| |||||||| ||||| Sbjct 1536 ATGCTTGTCACCCGACAGAATGGCGGCCTGCACCGCAGCTCCATAGGCAACAGCCTCATC 1477 Query 281800 AGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCTTA 281858 || || | ||| | ||| |||| || || ||||| |||| ||| | || || | | Sbjct 1476 TGGGTTGATAGTCTTATTCAGTTCCTTGCCGTTGAAGAAATCTTGCAGCAACTTCT-GAA 1418 Query 281859 CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCA 281918 ||| |||||||||| ||||| || || || || | || || | |||| ||| |||| Sbjct 1417 TCTTCGGAATACGAGTAGATCCACCCACCAACACCACCTCGTGAATTTGTGCTTTGTCCA 1358 Query 281919 GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAAC 281978 || | ||| | | || || |||||||| || | | || | ||| || Sbjct 1357 TCTTCGCATCGCGAAGGGCCTTCTCCACGGGTTCTTGAGTGCCACGGAAGAGGTCACCAC 1298 Query 281979 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAA 282036 | || || ||||| ||| || || || |||| | || || || ||||| || |||| Sbjct 1297 ACAGCTCCTCGAAACGAGCCCTCGT--GATTGACGTGTAGAAGTCGATTCCCTCAAACAG 1240 Query 282037 AGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACA 282096 ||| |||| |||| | | || | ||| || | ||| || || || ||||| Sbjct 1239 AGAGTCAATCTCAACATTGGCCTGTGCACTGGAACTCAGAGTACGCTTTGCTCGCTCACA 1180 Query 282097 TGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT-TGATTCAAATCTGTTTTATATTTTC 282155 ||| || | || | || | || | | || | | ||| || | || | ||||| Sbjct 1179 TGCAGTACGCAGACGACGCACAGC-TCTCTTGTTCTCCAGCAAGTCCTTCTTGTGTTTTC 1121 Query 282156 TCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATT 282215 |||||| || || | | || | ||| |||||| || ||||| ||||| | Sbjct 1120 GCTTGAATTCAGTTGCAAAGTGATTCACCAATCGAGAATCAAAGTCCTCACCACCCAAAT 1061 Query 282216 TAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAA 282275 || | || | || | | || | ||| | ||||| |||| |||| || | | Sbjct 1060 GGGTGTCACCGGCAGTTGACTTCACCTCGAAGATGCCATCCTCAATGGACAGAATGGAGA 1001 Query 282276 CATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTT 282335 |||| || |||||||| | ||| || || || || || ||| | | || | Sbjct 1000 CATCGAATGTGCCACCACCGAGATCGAAGATGAGGACGTTGCGTTCGCTACCAACCTTCT 941 Query 282336 TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAA 282395 | || ||||| || |||| || || ||||| || || || || || | | ||||| | Sbjct 940 TGTCCAGACCGTAGGCAATGGCTGCGGCAGTCGGCTCGTTGATGATGCGAAGCACATTCA 881 Query 282396 GACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAG 282455 | || | ||| | || |||||||| ||||| ||||| || || || || || |||| Sbjct 880 GGCCCGAAATAGTGCCAGCATCTTTTGTGGCCTGTCTCTGACCGTCATTGAAGTAGGCAG 821 Query 282456 GAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCA 282515 ||||||||| || ||||| || || || | |||| || || | |||| Sbjct 820 GAACAGTAACCACCGCATCCGTCACCGGACGGCCCAGGAAAGCTTCGGCCGTCTCCTTCA 761 Query 282516 TTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTG-CTTGGATTCATTTTGA 282574 | || | | ||| ||||| || | || || ||| | | ||| | ||| | | Sbjct 760 TCTTCAACAGCACCATAGATGAGATCTCCTC-GGGGAAGAAGGTCTTCGTCTCACCCTTA 702 Query 282575 TATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTC 282634 || || | || | ||| || || ||||| || || | |||||||| | ||| Sbjct 701 CATTCCACCTGAATCTTTGGCTTTCCGCCCACATTGATTACGTGGAATGGCCAGTGCTTC 642 Query 282635 ATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAA 282694 ||||| || ||| | | |||| ||| | | || || | || || ||||| || Sbjct 641 ATATCGAGCTGCACAGTCGGATCATCAAACTTGCGGCCGATCAGACGCTTGGCATCGAAC 582 Query 282695 ATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCT 282754 | | | ||||| || || | || | || | || || || || || || ||| |||| Sbjct 581 ACACTGTTGGTGGGGTTCATGGCCACCTGGTTCTTCGCGGCGTCACCGATGAGACGTTCG 522 Query 282755 GTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATT 282814 || || || || | ||||| || |||||||| || || || || || || || || Sbjct 521 GTGTCGGTGAAGGCCACATAGCTGGGTGTTGTGCGGTTGCCCTGGTCGTTGGCGATGATC 462 Query 282815 TCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCA 282874 || || || |||| ||| | ||||| ||||| | || || || || || |||||| Sbjct 461 TCCACCTTGCCATGTTGGAAAACACCCACACAGGAGTACGTAGTGCCCAAGTCGATACCA 402 Query 282875 A 282875 | Sbjct 401 A 401 >seq61391 Length=2572 Score = 159 bits (176), Expect = 3e-33 Identities = 449/684 (66%), Gaps = 8/684 (1%) Strand=Plus/Plus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 ||||| |||||||| ||||| | || | || | ||| | | || | ||| | || Sbjct 784 TCAAAGTCTTCACCACCCAAATGCGTGTCACCGGCCGTCGACTTCACCTCGAAGATGCCG 843 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 ||||||| || || | |||||| ||| ||||| |||| ||| || || || ||| Sbjct 844 TCTTCAATGCTCAGAATGGACACATCAAAGGTACCACCGCCCAGATCGAAGATCAGCACA 903 Query 282314 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373 || ||| | || || || ||||| || |||| |||||||| ||||||||| Sbjct 904 TTGCGCTCTGCACCCACCTTCTTGTCCAGACCGTAGGCAATGGCAGCAGCTGTTGGTTCA 963 Query 282374 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 282433 ||||| || | ||| || || | || | ||| | || || || ||||| || || | | Sbjct 964 TTAATGATACGCAACACGTTCATGCCCGAAATCGTACCAGCGTCCTTAGTCGCCTGACGT 1023 Query 282434 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTAC-TTCTTTTCCAAT 282492 || |||||| || || ||||| || || | || ||||| | || ||||| |||| Sbjct 1024 TGGCTATCGTTGAAGTAAGCAGGCACTGTGACCACCGCATCATTCACCTTCTTGCCCAAG 1083 Query 282493 ATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA-- 282550 || || || || | ||||| || | | ||| || || || | || | | Sbjct 1084 -TACGCCTCAGCCGTCTCCTTCATCTTCACCAGCACCATAGAGGAGATCTCCTCGGCACT 1142 Query 282551 GAATA-TTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 282609 |||| || ||| | || ||||| ||||||| | || || ||| ||| Sbjct 1143 GAATTGTTTCTTCTCTCCAC---GATATTCAACTTCAATCTTCGGCTTTCCACCCGAATT 1199 Query 282610 AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 282669 | | | || ||||| | |||||| || || || || | | || | |||| ||| Sbjct 1200 CACTATAGTGAACGGCCAGTGTTTCATGTCGGACTGCACCGTCGGATCGTCAAAACGTCT 1259 Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729 || || | || || || || || | || || | ||||| | ||| | |||| ||| Sbjct 1260 GCCGATCAGGCGCTTCGCGTCGAACACCGTGTTAGAGGGATTCATTGCCACCTGATTTTT 1319 Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789 |||||||||||||||||| |||| || || || || | |||||| || |||||||| Sbjct 1320 CGCTGCATCTCCAATCAGACGTTCGGTGTCAGTGAAGGCAACATAGCTGGGCGTTGTGCG 1379 Query 282790 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 282849 ||||| || ||||| || || ||||| || || || | ||| | || || ||||| Sbjct 1380 GTTACCCTGGTCATTGGCGATTATTTCTACCTTTCCGTGTTGGAAAACGCCAACACATGA 1439 Query 282850 AAAAGTTGTTCCTAAATCAATACC 282873 ||||| || || | ||| || || Sbjct 1440 GAAAGTCGTGCCGAGATCGATTCC 1463 >seq91756 Length=1364 Score = 123 bits (136), Expect = 2e-22 Identities = 179/253 (71%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 282573 GATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATT 282632 ||||| ||||||| | ||| || ||| ||| | | ||| || ||||||| || Sbjct 1254 GATATTCAACTTCAACCTTTGGCTTTCCACCCGAATTCACTATTTTGAAGGGCCAATGTT 1195 Query 282633 TCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAA 282692 |||| || || || || | || |||| ||| ||| || || | || || ||||||| Sbjct 1194 TCATGTCAGACTGCACCATCTGATCATCGAAACGTCTGCCGATCAGACGCTTCGCATCAA 1135 Query 282693 AAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT 282752 | | || || | ||||| | ||| | |||| ||| |||||||||||||||||| ||| Sbjct 1134 ACACCGTGTTAGAGGGATTCATTGCCACCTGATTTTTCGCTGCATCTCCAATCAGACGTT 1075 Query 282753 CTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAA 282812 | || || || || | |||||| || |||||||| || || || ||||| ||||| | Sbjct 1074 CGGTGTCAGTGAAGGCAACATAGCTGGGCGTTGTGCGGTTGCCCTGGTCATTGGCAATGA 1015 Query 282813 TTTCAACTTTACC 282825 |||| || || || Sbjct 1014 TTTCTACCTTTCC 1002 >seq11559 Length=9825 Score = 98.7 bits (108), Expect = 7e-15 Identities = 216/323 (67%), Gaps = 3/323 (1%) Strand=Plus/Minus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 || |||||||||||||| | | |||| || || || || | ||| | ||| Sbjct 2515 TCGAAATCTTCACCTCCAAGATGTGTATCACCACTGGTGGCAAGGACCTCGAAGACTCCG 2456 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 | |||| | || | || ||||||| ||| ||||| || | ||| || | || | | Sbjct 2455 TTGTCAATTGTCATTAAAGAAACATCAAAGGTGCCACCTCCGAGATCGAATACCAGGATA 2396 Query 282314 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373 ||| | || | ||| || || || | || || |||| || || || || ||||| Sbjct 2395 TTCTTCTC---GCCTTCCTTCTTGTCCAATCCGTAAGCAATTGCCGCTGCCGTGGGTTCG 2339 Query 282374 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 282433 || || || | ||| ||||| ||||||||||| || |||||||| || | |||| Sbjct 2338 TTGATTATCCGCAACACATTCAGACCAGCAATAACGCCAGCATCTTTTGTTGACTGTCGC 2279 Query 282434 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATA 282493 || | |||||| || ||||| || ||||| || || |||| || |||| | || | | Sbjct 2278 TGAGCATCGTTGAAGTATGCTGGCACAGTTATGACAGCATGAGTGACTTTGGTCCCCAAA 2219 Query 282494 TAAGCGCTTGCTGTTTGTTTCAT 282516 ||||| || |||| ||||| Sbjct 2218 TAAGCCTCGGCGATTTGCTTCAT 2196 >seq6225 Length=13228 Score = 91.5 bits (100), Expect = 1e-12 Identities = 153/221 (69%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 |||||| |||||||| | |||||||||||||| || || || || | ||||| ||| Sbjct 3100 GGTAAAACTGGTCGTATACGTGGAAATTTGATGGGCAAACGCGTTGACTTTTCTGCCCGT 3159 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || ||||| ||| ||||||||||| | | || || |||| |||||||| | ||| Sbjct 3160 ACGGTTATCACTGCTGATCCTAATCTCGGCCTGGATCAAGTAGGTGTTCCCAGAACGATT 3219 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGATTATTTGACTCAA 432467 || | |||||||| || ||| |||||| | || || |||| | | || Sbjct 3220 GCTCAGAATCTTACCTTCCCTGAACGAGTAACACAGGCCAACATCGATTTTCTACAGAAA 3279 Query 432468 TTAGTGAAAAATGGTAAAAGAGTATATCCAGGTGCCAATTT 432508 |||| ||||||||| | | ||||| || ||||| || Sbjct 3280 CTAGTACAAAATGGTACCA---TGTATCCGGGAGCCAAGTT 3317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3733742557482444