Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq7124 199 8e-46 seq58369 179 7e-40 seq36647 167 5e-36 seq73473 158 2e-33 seq36821 156 8e-33 seq8609 156 8e-33 seq79732 134 3e-26 seq61938 120 6e-22 seq54248 107 4e-18 seq47691 89.7 1e-12 >seq7124 Length=12460 Score = 199 bits (220), Expect = 8e-46 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || ||| || || ||||||||||| || |||||||| ||||| || || || Sbjct 7563 ACCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTCTGA 7504 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | |||||| || | || || ||||||||||| || | |||||||||||||| Sbjct 7503 GAGTGTGCGACCGTCCTCCAACTGCTTACCAGCAAAGATCAGGCGCTGTTGATCTGGAGG 7444 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || ||||||||||| |||||||| || |||| || | ||||| || Sbjct 7443 AATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATCGAGTCGCTCGGTTCCAC 7384 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| |||||||| |||| |||||| ||||| |||||||| Sbjct 7383 CTCCAAAGTTATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 7336 Score = 174 bits (192), Expect = 3e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || |||||||| || || || ||||| ||||| || || || || | | ||| Sbjct 7323 ACGCAGTACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCCGAGAGTGTACGACC 7264 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || ||||||||||| || | || || |||||||| || |||||||| Sbjct 7263 GTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGAGGAATGCCTTCCTT 7204 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| ||||||||||| || |||||||| || | ||| | ||||| || ||||| || || Sbjct 7203 ATCCTGAATCTTTGCCTTCACATTTTCGATAGAGTCACTCGGTTCCACCTCCAACGTGAT 7144 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| ||||| || ||||| Sbjct 7143 GGTCTTGCCAGTCAGTGTCTTCACAAAGATTTGCAT 7108 >seq58369 Length=2743 Score = 179 bits (198), Expect = 7e-40 Identities = 170/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | ||||||||||| ||||| || ||||| || || || || | | || Sbjct 1171 ACGCAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGAGAGCGTGCGGCC 1112 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||||||||||| || || || || |||| |||||| || || || || || || || Sbjct 1111 ATCTTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGGATACCCTCTTT 1052 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||| ||||| || || ||||||||||| | ||| | ||||| || |||| ||| || Sbjct 1051 ATCTTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTGGGTTCGACCTCCAGAGTAAT 992 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||||||||||||||| || |||||||||||| Sbjct 991 GGTTTTGCCTGTCAACGTCTTAACGAATATCTGCATT 955 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | ||||||||||| ||||| || ||||| |||||||| || | | || Sbjct 714 CGCAGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTACGGCCA 655 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || |||||||| ||||| ||||| |||||||| ||||| || || || ||||| || Sbjct 654 TCCTCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTCTTTG 595 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| || || ||||| ||||| ||||| | ||| | ||||| || |||| || ||| Sbjct 594 TCTTGGATTTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCGACCTCCAGGGTAATC 535 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||| ||||| ||||| |||||||| Sbjct 534 GTCTTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || | || ||||| ||||| || || || || || ||||| || | | || Sbjct 943 ACGCAAGACCAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCC 884 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| |||||||| || || ||||| |||| ||||| || || || || |||||||| Sbjct 883 ATCTTCGAGTTGTTTACCGGCGAAGATCAGTCGCTGTTGGTCCGGGGGGATACCTTCCTT 824 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||| ||||| || || |||||||| |||| ||| | ||||| || |||||||| || Sbjct 823 ATCTTGGATCTTGGCCTTGACATTTTCGATCGAGTCACTGGGTTCGACCTCCAAAGTAAT 764 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || |||| ||||||||||| || ||||| Sbjct 763 CGTCTTACCAGTCAGGGTCTTTACAAAGATTTGCAT 728 Score = 132 bits (146), Expect = 9e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || | || || || ||||| || || || || || || |||||| | | ||| Sbjct 487 ACGCAAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAGAGTACGACC 428 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| ||||| || || || || || |||| ||||| || || || || || ||||| Sbjct 427 ATCTTCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGGATCCCCTCCTT 368 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||| || || || || || ||||| | ||| | ||||| || |||| || || Sbjct 367 ATCTTGAATTTTAGCCTTCACGTTCTCAATTGAGTCACTGGGTTCGACCTCCAGGGTAAT 308 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| || | ||||| ||||| || ||||| Sbjct 307 CGTCTTGCCAGTAAGTGTCTTCACAAAAATTTGCAT 272 >seq36647 Length=4477 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || ||||||||||| || || ||||| ||||| || ||||| Sbjct 4365 CCACCACGCAGACGGAGTACCAAGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGAC 4306 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| | || || ||||| ||||| || | || || || ||||| Sbjct 4305 AGCGTACGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGA 4246 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| ||||||||||| || |||||||| |||| ||| | || || || Sbjct 4245 ATACCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGAGTCACTCGGCTCCACC 4186 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| |||| ||||| ||||| |||||||| Sbjct 4185 TCCAACGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 4139 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 82700 AGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTC 82759 ||| || ||||||||||| |||||||| || || ||||| ||||||| ||||| || || Sbjct 4477 AGGAATACCTTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATCGAGTCATTCGGCTC 4418 Query 82760 TACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||| | |||||||| ||| | | ||||||||||||| |||| ||| Sbjct 4417 AACATCCAGCGGTATCGTCTCGCCAGACGACGTCTTTACAAAGATCTCCAT 4367 >seq73473 Length=1996 Score = 158 bits (174), Expect = 2e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || || ||||| ||||| || ||||| || || |||||||| || | | || Sbjct 1619 ACGCAGGACCAAATGCAGTGTAGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCC 1560 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| |||||||| || || || || | || ||| || ||||| || ||||| || || Sbjct 1559 GTCTTCGAGTTGTTTACCGGCGAAAATGAATCGTTGCTGGTCTGGTGGGATTCCCTCTTT 1500 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || | |||||| || || ||||| || |||| || ||||||| || || | ||| || Sbjct 1499 GTCCTAAATCTTAGCCTTGACATTCTCGATCGAGTCGCTAGGTTCAACCTCTAGAGTAAT 1440 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 || ||||| ||||||||||| ||||| ||||||| Sbjct 1439 AGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCA 1405 Score = 102 bits (112), Expect = 2e-16 Identities = 158/226 (70%), Gaps = 10/226 (4%) Strand=Plus/Minus Query 82594 AACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTAC 82653 |||| |||| | | ||| ||||| |||||||| | || ||| |||| || | | | Sbjct 1856 AACGTAGAATCAGATACAGCGTAGACTCTTTCTGGGTGTTGTAACCAGAGAGGGTGCGGC 1797 Query 82654 CGTCTTCTAGTTG---------TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTA 82704 | ||||| ||||| ||| || | | | ||||||| ||| ||||| || | Sbjct 1796 CATCTTCGAGTTGCTTAAGTTGTTTACCGTCGATGTATAGTCTTCCTTGGTCTGGGGG-A 1738 Query 82705 TTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTT 82764 |||| || || || ||| ||| || || ||||| || |||| || |||| || || | Sbjct 1737 TTCCCTCTTTGTCCTGATACTTAGCCTTGACATTCTCGATCGAGTCGCTAGGCTCAACCT 1678 Query 82765 CCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | | | | || |||||||| ||||||||||| ||||| |||||||| Sbjct 1677 CTAGAATAATGGTCTTGCCAGTCAACGTCTTCACAAAGATCTGCAT 1632 >seq36821 Length=4459 Score = 156 bits (172), Expect = 8e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || | |||| ||||| ||||| || || || |||||||| || | | || Sbjct 1555 ACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCC 1496 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || |||||||| || || ||||||||||| ||||| ||||| || ||||||||||| Sbjct 1495 ATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTT 1436 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || ||||| ||||||| || | || || || || | ||| || Sbjct 1435 GTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAAT 1376 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| || || ||||| |||||||| Sbjct 1375 AGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 156 bits (172), Expect = 8e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || | |||| ||||| ||||| || || || |||||||| || | | || Sbjct 10438 ACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCC 10379 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || |||||||| || || ||||||||||| ||||| ||||| || ||||||||||| Sbjct 10378 ATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTT 10319 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || ||||| ||||||| || | || || || || | ||| || Sbjct 10318 GTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAAT 10259 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| || || ||||| |||||||| Sbjct 10258 AGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 >seq79732 Length=1757 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || | ||| || || || || || || ||||||||||| || ||| | | || || Sbjct 1156 AGGACCAGGTGAAGGGTGGACTCCTTTTGGATATTATAATCCGACAGAGTGCGTCCATCC 1215 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || ||||| || || |||||||| | ||| || |||||||| || || || || || Sbjct 1216 TCAAGCTGTTTGCCGGCGAAGATTAGCCGTTGCTGGTCTGGAGGGATACCCTCTTTGTCC 1275 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||| || ||||||||||| || | || ||| || || || | ||||| ||| Sbjct 1276 TGAATCTTGGCCTTTACATTTTCGATTGAGTCCGAAGGCTCAACCTCGAGGGTTATAGTC 1335 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| | || || |||||||||||||| Sbjct 1336 TTCCCTGTTAGGGTTTTGACAAATATCTGCAT 1367 >seq61938 Length=2545 Score = 120 bits (132), Expect = 6e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 82692 TGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 || |||||||| || ||||||||||| ||||||||||| || ||||| || |||| ||| Sbjct 3 TGGTCTGGAGGAATACCTTCCTTATCCTGAATCTTTGCCTTCACATTCTCGATCGAGTCA 62 Query 82752 TTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || || ||||| || || |||||||| |||| ||||||||||| ||||||||| Sbjct 63 CTCGGCTCAACCTCCAACGTGATGGTCTTGCCAGTCAGTGTCTTTACAAAGATCTGCATT 122 Query 82812 A 82812 | Sbjct 123 A 123 >seq54248 Length=2992 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 82692 TGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 || || ||||| || ||||||||||| |||||||| || || ||||| || || | ||| Sbjct 2732 TGGTCCGGAGGAATACCTTCCTTATCCTGAATCTTGGCCTTCACATTCTCGATGGAGTCA 2673 Query 82752 TTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| ||||| ||||| |||||||| ||||| ||||| || || |||||||| Sbjct 2672 CTGGGCTCTACCTCCAATGTTATGGTCTTGCCAGTCAATGTCTTCACGAAGATCTGCAT 2614 >seq47691 Length=3461 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || |||| || |||||||||||||||| ||| | |||| ||||| || || || ||| Sbjct 2648 CCCTCCTGGTCCTGAATCTTTGCTTTTAAATTCCCTATCGAATCATCTGGCTCAACCTCC 2589 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | | |||||||||||| | | ||||||| ||||| |||||||| Sbjct 2588 AGCGGTATCGTCTTGCCAGACGACGTCTTCACAAAGATCTGCAT 2545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980062349039666