Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq7124 114 1e-20 seq36647 113 4e-20 seq36821 107 2e-18 seq8609 107 2e-18 seq58369 96.9 3e-15 >seq7124 Length=12460 Score = 114 bits (126), Expect = 1e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| ||||| ||||| |||||||| || | | ||| |||| |||||| | Sbjct 7313 AAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTC--CGAGAGTGTACGACCGTCCTCCA 7256 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||| || | || || ||||||||||| ||||| ||||||||||| || | Sbjct 7255 GCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGAA 7196 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||||| ||| | | || | | ||| | || ||||| || | |||| ||| |||| Sbjct 7195 TCTTTGCCTTCACATTTTCGATAGAGTCACTCGGTTCCACCTCCAACGTGATGGTCTTGC 7136 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATGGC 133663 | ||||| || || || || || ||||| || Sbjct 7135 CAGTCAGTGTCTTCACAAAGATTTGCATCGC 7105 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| |||||||| || | ||| ||| |||||| | |||||| || Sbjct 7532 GTCGACTCTTTCTGGATATTGTAGTCTGAGAGTGTGCGACC-GTCCTCCAACTGCTTACC 7474 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||| || || ||||| |||||||||||||| |||||| ||| Sbjct 7473 AGCAAAGATCAGGCGCTGTTGATCTGGAGGAATGCCTTCCTTGTCCTGAATCTTTGCCTT 7414 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | || |||| | || ||||| || | || | ||| ||||| ||||| || Sbjct 7413 TACATTCTCGATCGAGTCGCTCGGTTCCACCTCCAAAGTTATGGTCTTGCCAGTCAGCGT 7354 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 7353 CTTCACAAAGATCTGCATG 7335 >seq36647 Length=4477 Score = 113 bits (124), Expect = 4e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| |||||||| || || ||| | | | || || | ||||||||| Sbjct 4335 GTCGACTCCTTCTGGATATTGTAGTCAGACAGCGTACGGCCA-TCTTCCAACTGCTTGCC 4277 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| ||||| || |||||||| || |||||| ||| Sbjct 4276 AGCGAAGATCAGACGCTGCTGGTCCGGAGGAATACCTTCCTTATCCTGAATCTTTGCCTT 4217 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || ||| | |||||||| || | |||| ||| ||||| ||||| || Sbjct 4216 CACATTTTCGATCGAGTCACTCGGCTCCACCTCCAACGTGATGGTCTTGCCAGTCAGGGT 4157 Query 133643 TTTTACGAAAATCTGCATGGC 133663 || || ||||||||||| || Sbjct 4156 CTTCACAAAAATCTGCATAGC 4136 >seq36821 Length=4459 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || |||||||| || || |||||||| | |||| | | | |||||||| || || || Sbjct 1536 GTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCA-TCCTCGAGTTGTTTACC 1478 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || | ||| ||||| || ||||| ||||||||||| |||||| ||| Sbjct 1477 GGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATCTTAGCCTT 1418 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || |||| ||||||| || || | || | || ||||| |||| || Sbjct 1417 AACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATAGTCTTGCCAGTCAAGGT 1358 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || || |||||||| Sbjct 1357 TTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || |||||||| || || |||||||| | |||| | | | |||||||| || || || Sbjct 10419 GTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCA-TCCTCGAGTTGTTTACC 10361 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || | ||| ||||| || ||||| ||||||||||| |||||| ||| Sbjct 10360 GGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATCTTAGCCTT 10301 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || |||| ||||||| || || | || | || ||||| |||| || Sbjct 10300 AACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATAGTCTTGCCAGTCAAGGT 10241 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || || |||||||| Sbjct 10240 TTTGACAAAGATCTGCAT 10223 >seq58369 Length=2743 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || |||||||| || ||||||||||| | ||| | | | |||||||| || || || Sbjct 696 GTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTACGGCCA-TCCTCGAGTTGTTTACC 638 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| | ||||| || || ||||||||||| ||||| ||| ||| |||| Sbjct 637 AGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTCTTTGTCTTGGAT-TTTGGCTT 579 Query 133583 -GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 || | ||||| | ||| |||| || || || | ||| | || || || ||||| | Sbjct 578 TGACATTCTCAATAGAGTCACTGGGTTCGACCTCCAGGGTAATCGTCTTACCAGTCAGGG 519 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| Sbjct 518 TCTTCACAAAAATCTGCAT 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482573037028560