Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq7124 127 1e-24 seq73473 109 4e-19 seq36821 98.7 7e-16 seq8609 98.7 7e-16 seq58369 96.9 2e-15 >seq7124 Length=12460 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||| || ||||| |||||| || || ||||| || || Sbjct 7563 ACCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTCTGA 7504 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| |||| ||||| || || || ||||| |||| ||||| |||||| | || Sbjct 7503 GAGTGTGCGACCGTCCTCCAACTGCTTACCAGCAAAGATCAGGCGCTGTTGATCTGGAGG 7444 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || || | |||| || | | |||||| | ||||| Sbjct 7443 AATGCCTTCCTTGTCCTGAATCTT-TGCCTTTACATTCTCGATCGAGTCGCTCGGTTCCA 7385 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || || || || | ||| || |||||||||||||| Sbjct 7384 CCTCCAAAGTTATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 7336 >seq73473 Length=1996 Score = 109 bits (120), Expect = 4e-19 Identities = 162/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||||| || || ||| || || ||||||||||| ||| Sbjct 1630 CCACCACGGAGACGCAGGACCAAATGCAGTGTAGACTCCTTCTGGATGTTGTAATCAGAG 1571 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | |||||| ||||| ||||| || || ||||| ||| | || Sbjct 1570 AGGGTGCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAATCGTTGCTGGTCTGGTGGG 1511 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| ||| || | | |||| || | | |||||| | ||| || Sbjct 1510 ATTCCCTCTTTGTCCTAAATCTT-AGCCTTGACATTCTCGATCGAGTCGCTAGGTTCAAC 1452 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCA 33748 || | || || ||||| || || ||||| || ||||| ||||||| Sbjct 1451 CTCTAGAGTAATAGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCA 1405 >seq36821 Length=4459 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 33518 CGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAAT 33577 || ||||||| | | ||| || |||| ||| | || ||||||||| |||||||||| Sbjct 1571 CGCCACCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAAT 1512 Query 33578 CGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTT 33637 | ||||| ||||| | || || | |||||| ||||| || || | | ||| || ||| Sbjct 1511 CAGAGAGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTG 1452 Query 33638 GCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT 33696 | || | ||||| ||||| || || | | ||||| || | | |||||| | Sbjct 1451 GGGGGATTCCTTCCTTGTCCTGGATCTT-AGCCTTAACATTCTCAATCGAGTCGCTGGGC 1393 Query 33697 TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || | || || || || || || || ||||| |||||||||||||| Sbjct 1392 TCAACCTCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 33518 CGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAAT 33577 || ||||||| | | ||| || |||| ||| | || ||||||||| |||||||||| Sbjct 10454 CGCCACCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAAT 10395 Query 33578 CGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTT 33637 | ||||| ||||| | || || | |||||| ||||| || || | | ||| || ||| Sbjct 10394 CAGAGAGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTG 10335 Query 33638 GCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT 33696 | || | ||||| ||||| || || | | ||||| || | | |||||| | Sbjct 10334 GGGGGATTCCTTCCTTGTCCTGGATCTT-AGCCTTAACATTCTCAATCGAGTCGCTGGGC 10276 Query 33697 TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || | || || || || || || || ||||| |||||||||||||| Sbjct 10275 TCAACCTCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 >seq58369 Length=2743 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| ||| |||||| ||| ||||| ||||| || || ||||| ||||| | || || Sbjct 252 ACCAGATGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGAGAGGGTGCGCCCATCTTCG 193 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||| ||||| ||||||| ||||| || ||| | || | || |||||||| Sbjct 192 AGTTGTTTGCCGGCGAAAATCAGTCGCTGTTGGTCTGGTGGTATCCCCTCTTTGTCTTGG 133 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || ||| | ||| || | | ||| || | || || || | ||||| ||||| Sbjct 132 ATCTTGGCTTTGA-CATTCTCGATCGAGTCACTAGGCTCGACCTCCAAAGTGATAGTTTT 74 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || || || ||||||||||| Sbjct 73 GCCAGTCAAAGTCTTAACGAAGATCTGCAT 44 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| ||| ||||| ||||||||| || |||||||| ||||| || || | || || Sbjct 709 CACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTACGGCCATCCTC 650 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | |||||| || || || || | | |||||||| | || | ||||||||||| Sbjct 649 GAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTCTTTGTCTTG 590 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||||| | || |||| || | | ||| || | ||| || || | || ||||| | Sbjct 589 GATTTT-GGCTTTGACATTCTCAATAGAGTCACTGGGTTCGACCTCCAGGGTAATCGTCT 531 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | || || ||||| |||||||| Sbjct 530 TACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| || |||| ||| ||||| || ||||| |||||||| || || Sbjct 954 CCACCACGGAGACGCAAGACCAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAA 895 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | |||||| ||||| || |||| ||||| || || | || Sbjct 894 AGGGTGCGGCCATCTTCGAGTTGTTTACCGGCGAAGATCAGTCGCTGTTGGTCCGGGGGG 835 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| || || || || || | ||| || | | ||| || | ||| || Sbjct 834 ATACCTTCCTTATCTTGGATCTTGGCCTTGA-CATTTTCGATCGAGTCACTGGGTTCGAC 776 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || ||||| ||||| || | || ||||||||||| ||||| Sbjct 775 CTCCAAAGTAATCGTCTTACCAGTCAGGGTCTTTACAAAGATTTGCAT 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328141971012480