Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq79732 118 3e-21 seq36647 105 2e-17 seq58369 96.9 8e-15 seq7124 87.8 4e-12 seq3291 86.0 1e-11 >seq79732 Length=1757 Score = 118 bits (130), Expect = 3e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| |||||| || ||||| || || || || | || || || ||| ||| Sbjct 1364 CAGATATTTGTCAAAACCCTAACAGGGAAGACTATAACCCTCGAGGTTGAGCCTTCGGAC 1305 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| |||||| |||||||| || ||||| || || || ||| ||| Sbjct 1304 TCAATCGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCAGACCAGCAA 1245 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| || ||| | || |||||| | ||| || | ||||| || || Sbjct 1244 CGGCTAATCTTCGCCGGCAAACAGCTTGAGGATGGACGCACTCTGTCGGATTATAATATC 1185 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| || |||||||| || | |||||||| Sbjct 1184 CAAAAGGAGTCCACCCTTCACCTGGTCCTCAGACTTCG 1147 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||||||| | || |||||||| || ||||| || |||| |||||| || | || ||| Sbjct 1147 CGAAGTCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATATTATAATCCGACAGAGTG 1206 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||| || ||||| || ||||||||||| |||||||| || Sbjct 1207 CGTCCATCCTCAAGCTGTTTGCCGGCGAAGATTAGCCGTTGCTG 1250 >seq36647 Length=4477 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| ||||| ||||| |||| Sbjct 4142 CAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACGTTGGAGGTGGAGCCGAGTGAC 4201 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | ||||| || ||| ||||||||| || || ||||| ||| |||||| || Sbjct 4202 TCGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCGGACCAGCAG 4261 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || ||||||||||||||||| | || || | || ||||| || Sbjct 4262 CGTCTGATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGTACGCTGTCTGACTACAATATC 4321 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| ||||| ||| Sbjct 4322 CAGAAGGAGTCGACTCTGCAC 4342 >seq58369 Length=2743 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| || ||| | ||||| ||||| || ||| |||| || ||| |||| Sbjct 959 CAGATATTCGTTAAGACGTTGACAGGCAAAACCATTACTCTGGAGGTCGAACCCAGTGAC 1018 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | ||| || ||| ||||| ||||| ||||| || || |||||| ||| Sbjct 1019 TCCATTGAAAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATCCCCCCGGACCAACAA 1078 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||| || |||||||| || || | |||||||| | || | |||| ||||| || Sbjct 1079 CGACTGATATTCGCCGGTAAACAACTAGAAGATGGCCGCACGCTCTCCGACTACAATATC 1138 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||||||||||| || || || || | ||||| Sbjct 1139 CAAAAAGAGTCTACTCTGCATCTGGTGCTGCGTCTTCG 1176 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 206180 TTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || || || || || ||||| |||||||| || ||| |||| | || Sbjct 737 TTTGTAAAGACCCTGACTGGTAAGACGATTACTTTGGAGGTCGAACCCAGTGACTCGATC 796 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 ||| || ||| ||||| ||||| || ||||| || |||||| || |||| Sbjct 797 GAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCGGACCAACAGCGACTG 856 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 ||||||||||| || || | |||||||| | || | | || |||||| |||| || Sbjct 857 ATCTTCGCCGGTAAACAACTCGAAGATGGCCGCACCCTTTCTGACTACAACATCCAAAAG 916 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| || || || ||| | || || Sbjct 917 GAATCGACTCTCCATCTGGTCTTGCGTCTCCG 948 >seq7124 Length=12460 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||||| || || || || || |||||||| |||||| ||| Sbjct 7339 CAGATCTTTGTGAAGACGCTGACTGGCAAGACCATAACTTTGGAGGTGGAACCGAGCGAC 7398 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| |||||| ||||||||| || || ||||| ||| || || || Sbjct 7399 TCGATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGATCAACAG 7458 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || ||||||||||| || || | || | | || ||||| || Sbjct 7459 CGCCTGATCTTTGCTGGTAAGCAGTTGGAGGACGGTCGCACACTCTCAGACTACAATATC 7518 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||||||||| ||||| ||| Sbjct 7519 CAGAAAGAGTCGACTCTGCAC 7539 >seq3291 Length=16864 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 101529 CGGCAGCTTCAGCCACCTTCCGGAGGTAATTGTGCCTCTTCTCCTTTCTTAATCTCTCGA 101588 |||||| |||||| ||||| || | ||||||||| | |||||| |||| | || | | Sbjct 1746 CGGCAGTTTCAGCAACCTTTCGAACGTAATTGTGACGTTTCTCCATTCTCAGTCGGGCAA 1687 Query 101589 AACGAAGGGCAGATTGTCCTCCCCTCCCGTGTTTCTTTGGCAAAGAGACGTCAAAATTAT 101648 |||| | ||| || || ||||| | ||||| || || || | |||| || |||| Sbjct 1686 AACGGACGGCGGACTGACCTCCTCGTCCGTGCTTTTTAGGTAGTTCAACGTTGAACTTAT 1627 Query 101649 G-AAGAATTTTCTTGGTGTTCCCAGAGAGAGTCGCGAAAAGAGC 101691 | |||| || | ||||||||||||||| || |||| ||||| Sbjct 1626 GCAAGACTTCACG-GGTGTTCCCAGAGAGGGTGCCGAACAGAGC 1584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179696457168774