Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq36647 95.1 1e-14 seq58369 93.3 4e-14 seq31935 87.8 2e-12 seq7124 86.0 6e-12 >seq36647 Length=4477 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | ||||| || || || |||||||| || || Sbjct 4360 ACGCAGACGGAGTACCAAGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGACAGCGT 4301 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| | ||| || || | |||| |||||||| || || ||||| || || Sbjct 4300 ACGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGAATACC 4241 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| ||| ||| |||| | ||| | | || |||||||||| || | Sbjct 4240 TTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGAGTCACTCGGCTCCACCTCCAA 4181 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || |||||||| || || | ||||||||||| Sbjct 4180 CGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 4139 >seq58369 Length=2743 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| ||||| | |||| || |||||||||||||||||| | ||||| | Sbjct 486 CGCAAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAGAGTACGACCA 427 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||| || || |||| | || || |||||||| || || || || || || ||| Sbjct 426 TCTTCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGGATCCCCTCCTTA 367 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| |||| | || | | || | || || || || | || | | Sbjct 366 TCTTGAATTTTAGCCTTCACGTTCTCAATTGAGTCACTGGGTTCGACCTCCAGGGTAATC 307 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||| || || || | ||||| |||||| Sbjct 306 GTCTTGCCAGTAAGTGTCTTCACAAAAATTTGCATG 271 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||| ||||| | ||| ||| ||||||||| ||||| |||| Sbjct 237 GACTCCTTTTGAATGTTATAGTCAGAGAGGGTGCGCCCATCTTCGAGTTGTTTGCCGGCG 178 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || |||||||| ||||| ||||| || ||||| || || || ||| | Sbjct 177 AAAATCAGTCGCTGTTGGTCTGGTGGTATCCCCTCTTTGTCTTGGATCTTGGCTTTGACA 118 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||| || || | || | ||||| ||||||| ||| || Sbjct 117 TTCTCGATCGAGTCACTAGGCTCGACCTCCAAAGTGATAGTTTTGCCAGTCAAAGTCTTA 58 Query 132110 ATGAAAATCTGCATGAC 132126 | ||| |||||||| || Sbjct 57 ACGAAGATCTGCATCAC 41 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| ||| | | || || ||||| ||||||||||| | ||| || | Sbjct 942 CGCAAGACCAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCA 883 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||| |||||||||| |||| || |||||||| || || || || ||||| ||| Sbjct 882 TCTTCGAGTTGTTTACCGGCGAAGATCAGTCGCTGTTGGTCCGGGGGGATACCTTCCTTA 823 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | | || | || || || || | || | | Sbjct 822 TCTTGGATCTTGGCCTTGACATTTTCGATCGAGTCACTGGGTTCGACCTCCAAAGTAATC 763 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || ||||||||||| || |||| || || |||||| Sbjct 762 GTCTTACCAGTCAGGGTCTTTACAAAGATTTGCATG 727 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| ||| | | |||||||||||||| ||||| || | ||||| | Sbjct 714 CGCAGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTACGGCCA 655 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || ||||| |||||||| | |||| || | || ||||| || || ||||||||||| Sbjct 654 TCCTCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTCTTTG 595 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | || | || || | || || || || | || | | Sbjct 594 TCTTGGATTTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCGACCTCCAGGGTAATC 535 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||||||||| || || | ||||||||||| Sbjct 534 GTCTTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 >seq31935 Length=5035 Score = 87.8 bits (96), Expect = 2e-12 Identities = 205/306 (67%), Gaps = 9/306 (3%) Strand=Plus/Minus Query 147696 GTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACA 147755 ||||||| ||||| || || || | |||||| ||| || ||||||| || ||| Sbjct 1889 GTACAACTTTTCAAATTCTTCACCCCAACAATCGAAAAGACCTGGACACTCGTGAGGATC 1830 Query 147756 CATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAG 147815 ||| || | |||| |||||| | |||||||||||||| | || || ||||| || Sbjct 1829 CATAAGTGTCCACTTGTCGTTGTCTCGCACGCGTCGCATAAATAAGTCAGGAACCCAAAG 1770 Query 147816 CGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATG---TTGCGTTTCAAATT 147872 || | |||||| || ||| | || |||||||| || |||||| | | Sbjct 1769 AGCCATGAAAAGATCACGAGCTCTAGTCTCTTCGGCGCCAGTGTTTTTGCGTAGC--TCT 1712 Query 147873 AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACG 147932 | | || | | ||||| | |||||| || || | ||| | || | |||||| || Sbjct 1711 ACGAACTGCAGA-ATGTCTGGGTGCCATGGCTCCAAGTAAATCGCGAAGGCACCTGGTCG 1653 Query 147933 C---TTTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTC 147989 | ||||| || |||||||| | ||| | ||||||| || ||||| | ||| || | Sbjct 1652 CTTGTTTCCACCTTGGTCGACGTACCGCGCTGTGTTGTTGAAGACGCGGAGCATTGGGAC 1593 Query 147990 CAGGCC 147995 || ||| Sbjct 1592 CAAGCC 1587 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 147462 GATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGG 147520 ||| ||||| ||||| || ||||| || || || |||| ||| || | ||||| || | Sbjct 2201 GATGGACGCGAGATTACAAACGGCAGTTTCATCAGGCGA-GCTATATTCAACGATCTCCG 2143 Query 147521 CGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACG 147580 ||||||||| ||| || || ||||| | ||| ||||| || ||||| |||| Sbjct 2142 TGCACAGGTTCGAGCACTTAATTGTTCCCAGGTGTTGGTGATTAGACTTGCGATTACACG 2083 Query 147581 CGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAA 147628 |||| ||| | | |||| | || ||||||||||| ||| | ||||| Sbjct 2082 CGTCCTTGTATAACATGAATGGATTGCCGGTCTCGATTTGTGCTTCAA 2035 >seq7124 Length=12460 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/225 (69%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | |||||||| || || |||||||| | | || Sbjct 7557 ACGCAGACGGAGCACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTC--TGAGAGT 7500 Query 131962 ACGCGAA--TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATG 132019 |||| || || | ||| ||||| | | |||| || ||||||||||||||||| ||| Sbjct 7499 GTGCGACCGTCCTCCAACTGCTTACCAGCAAAGATCAGGCGCTGTTGATCTGGAGGAATG 7440 Query 132020 CCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCG 132079 ||||| || || ||| ||| || | | || | | ||| |||| ||||| || Sbjct 7439 CCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATCGAGTCGCTCGGTTCCACCTCC 7380 Query 132080 ACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || | || || |||||||| || || | || ||||||||| Sbjct 7379 AAAGTTATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATG 7335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475775378853840