Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq17644 111 2e-18 seq46662 100 4e-15 >seq17644 Length=7709 Score = 111 bits (122), Expect = 2e-18 Identities = 134/181 (74%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||||| ||||||||||| || || |||||||| |||| | |||| | | ||| Sbjct 3209 AAGGCCATGTCCATCATGAACTCCTTCGTGAACGACATCTTCGAGAGAATCGCCGCGGAG 3268 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAG 725081 | | ||||| | | || ||||||| || ||| | ||| || ||||||||| Sbjct 3269 TCTAGCCGCCTCTCCCACTACAACAAG---AAGTCGACCATCACCAGCAGAGAGATCCAG 3325 Query 725082 ACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACC 725141 |||||||| | ||| || ||| || || ||||||| ||| |||||||| ||||||||| Sbjct 3326 ACCGCCGTCAGGCTGCTCCTGCCGGGTGAGCTGGCCAAGCATGCCGTCTCTGAGGGCACC 3385 Query 725142 A 725142 | Sbjct 3386 A 3386 >seq46662 Length=3539 Score = 100 bits (110), Expect = 4e-15 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| ||| ||||| ||||| || ||| |||| ||| ||| | Sbjct 625 ATCTACAAGGTCCTCCGTCAGGTCCACCCTGATAC---TGG--CATC-TCCTCGAAGGCT 572 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || || |||||||| |||| | |||| | | ||| | || Sbjct 571 ATGTCCATCATGAACTCCTTCGTGAACGACATCTTCGAGAGAATCGCCGCGGAGTCTAGT 512 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| | | || ||| ||| || || || | ||||||||||| ||||| Sbjct 511 CGCCTCTCTCACTACAATAAGAAGTCTACCATTACCAGCAGAGAGATCCAGACTGCCGTC 452 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || || ||| || || ||||||| ||| |||||||| |||||||||| Sbjct 451 AGGCTTCTCCTGCCGGGTGAGCTGGCCAAGCATGCCGTCTCTGAGGGCACCA 400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7164279585839628