Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7124 134 1e-26 seq36647 125 6e-24 seq73473 114 1e-20 seq58369 104 2e-17 seq36821 98.7 9e-16 seq8609 98.7 9e-16 seq47691 89.7 5e-13 >seq7124 Length=12460 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| |||| | || ||||| || | || |||||| || || ||||| || | Sbjct 7334 CCACCGCGTAGACGCAGTACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCCGAG 7275 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| ||||||||||| || ||||| |||| ||||||||||| | |||| Sbjct 7274 AGTGTACGACCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGAGGA 7215 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| ||| |||||| ||||| | || | | | ||| |||| ||||||| Sbjct 7214 ATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATAGAGTCACTCGGTTCCACC 7155 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||||| || || || |||| || |||||||| || ||||| Sbjct 7154 TCCAACGTGATGGTCTTGCCAGTCAGTGTCTTCACAAAGATTTGCAT 7108 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || ||| || || || ||||| || | Sbjct 7562 CCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTCTGAG 7503 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||| ||||||||| ||||| |||| ||||| || || | |||| Sbjct 7502 AGTGTGCGACCGTCCTCCAACTGCTTACCAGCAAAGATCAGGCGCTGTTGATCTGGAGGA 7443 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| |||||| ||| | | | | | || |||||||| ||||||| Sbjct 7442 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATCGAGTCGCTCGGTTCCACC 7383 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || |||| || |||||||| |||||||| Sbjct 7382 TCCAAAGTTATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 7336 >seq36647 Length=4477 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| || | || || || | || |||| |||||| || || || Sbjct 4330 CTCCTTCTGGATATTGTAGTCAGACAGCGTACGGCCATCTTCCAACTGCTTGCCAGCGAA 4271 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| ||||| | ||||| ||| |||||| ||||| | | Sbjct 4270 GATCAGACGCTGCTGGTCCGGAGGAATACCTTCCTTATCCTGAATCTTTGCCTTCACATT 4211 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || ||| |||| |||||||||| |||||| || || || |||| || ||||| Sbjct 4210 TTCGATCGAGTCACTCGGCTCCACCTCCAACGTGATGGTCTTGCCAGTCAGGGTCTTCAC 4151 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 4150 AAAAATCTGCAT 4139 >seq73473 Length=1996 Score = 114 bits (126), Expect = 1e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||||| | ||| |||||| || ||||||||||| | Sbjct 1630 CCACCACGGAGACGCAGGACCAAATGCAGTGTAGACTCCTTCTGGATGTTGTAATCAGAG 1571 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || || || ||||| || || || || || |||||||| | || Sbjct 1570 AGGGTGCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAATCGTTGCTGGTCTGGTGGG 1511 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| |||||| ||||| ||| | | | | | || |||||| | ||| ||| Sbjct 1510 ATTCCCTCTTTGTCCTAAATCTTAGCCTTGACATTCTCGATCGAGTCGCTAGGTTCAACC 1451 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735 || | || || ||||| || ||||| || |||||||| ||||||| Sbjct 1450 TCTAGAGTAATAGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCA 1405 >seq58369 Length=2743 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||| ||||| | | || ||||| ||| | ||| ||| ||||| || ||||| |||| Sbjct 1183 TCCGCCACGAAGACGCAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGA 1124 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | || || | || || || || ||||| || ||||||| || || ||||||| || Sbjct 1123 GAGCGTGCGGCCATCTTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGG 1064 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||| || || |||||| ||||| | || | | | ||| || | ||| || Sbjct 1063 GATACCCTCTTTATCTTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTGGGTTCGAC 1004 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||| || || ||||| || ||||| || || || ||||||||||||| Sbjct 1003 CTCCAGAGTAATGGTTTTGCCTGTCAACGTCTTAACGAATATCTGCATTC 954 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | ||| | |||| ||| | || ||||||||||||||| || || | Sbjct 270 CCACCTCGGAGCCTGAGGACCAGATGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGAG 211 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| ||| | || || || || || || || || |||| ||||| ||||| | || Sbjct 210 AGGGTGCGCCCATCTTCGAGTTGTTTGCCGGCGAAAATCAGTCGCTGTTGGTCTGGTGGT 151 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| ||||| |||||| || | | | | | || ||| || | || ||| Sbjct 150 ATCCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATCGAGTCACTAGGCTCGACC 91 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| ||||| || |||||||| || || || |||||||| Sbjct 90 TCCAAAGTGATAGTTTTGCCAGTCAAAGTCTTAACGAAGATCTGCAT 44 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| |||| ||||| || ||||||||||||||||| |||| Sbjct 498 CCACCACGGAGACGCAAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGAT 439 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || || ||||| || || || |||| ||||| ||||||| || Sbjct 438 AGAGTACGACCATCTTCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGG 379 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | |||||| | | ||| ||| | ||||| | | | | ||| || | ||| || Sbjct 378 ATCCCCTCCTTAT-CTTGAATTTTAGCCTTCACGTTCTCAATTGAGTCACTGGGTTCGAC 320 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || ||||| || || || | || |||||||| || ||||| Sbjct 319 CTCCAGGGTAATCGTCTTGCCAGTAAGTGTCTTCACAAAAATTTGCAT 272 >seq36821 Length=4459 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| |||| ||| || ||| ||| ||||| ||||||||||| | Sbjct 1566 CCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAG 1507 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || || || ||||| || || || | | ||| ||||| | || Sbjct 1506 AGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGG 1447 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| ||| | | | | | || |||||| | || ||| Sbjct 1446 ATTCCTTCCTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACC 1387 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || || || ||||| ||||| ||||| |||||||| Sbjct 1386 TCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| |||| ||| || ||| ||| ||||| ||||||||||| | Sbjct 10449 CCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAG 10390 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || || || ||||| || || || | | ||| ||||| | || Sbjct 10389 AGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGG 10330 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| ||| | | | | | || |||||| | || ||| Sbjct 10329 ATTCCTTCCTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACC 10270 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || || || ||||| ||||| ||||| |||||||| Sbjct 10269 TCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 >seq47691 Length=3461 Score = 89.7 bits (98), Expect = 5e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 35555 ATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGC 35614 || ||||| || | ||| || | ||||| | || ||||||| | |||||||| ||| Sbjct 2726 ATCTTGTAGTCTGACAATGTACAATCGTCCTGCAACTGCTTATCATTAAATATCAGGCGC 2667 Query 35615 TGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC-ACCGT 35673 || ||||||||||||||| ||||| |||| ||| ||||||| | || || | || Sbjct 2666 AGCCGGTCCGAAGGAACGCCCTCCTGGTCC-TGAATCTTTGCTTTTAAATTCCCTATCGA 2608 Query 35674 GTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTG 35733 || | || ||||||| || ||||| || || | | | || |||||||| ||||| Sbjct 2607 ATCATCTGGCTCAACCTCCAGCGGTATCGTCTTGCCAGACGACGTCTTCACAAAGATCTG 2548 Query 35734 CAT 35736 ||| Sbjct 2547 CAT 2545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450003054533520