Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq31935 183 4e-41 seq36919 114 2e-20 >seq31935 Length=5035 Score = 183 bits (202), Expect = 4e-41 Identities = 371/543 (68%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 69495 TTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACA 69554 ||| |||| ||| || | | ||| ||||| || |||||| ||| | || ||||| Sbjct 1901 TTCGTATTTTGTGTACAACTTTTCAAATTCTTCACCCCAACAATCGAAAAGACCTGGACA 1842 Query 69555 TTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATC 69614 || | ||| ||| | || |||| || | || || ||| |||||||| || Sbjct 1841 CTCGTGAGGATCCATAAGTGTCCACTTGTCGTTGTCTCGCACGCGTCGCATAAATAAGTC 1782 Query 69615 GGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttt 69674 |||| ||||||||| || || ||||| | | |||| | ||||| || || ||||| Sbjct 1781 AGGAACCCAAAGAGCCATGAAAAGATCACGAGCTCTAGTCTCTTCGGCGCCAGTGTTTTT 1722 Query 69675 tttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGAC 69734 || || | |||| || ||| || | |||||||| || | || ||||| | | | Sbjct 1721 GCGTAGCTCTACGAACTGCAGAATGTCTGGGTGCCATGGCTCCAAGTAAATCGCGAAGGC 1662 Query 69735 TCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAG 69794 || ||||| || ||||| || || || | ||| | || ||||| || |||| | || Sbjct 1661 ACCTGGTCGCTTGTTTCCACCTTGGTCGACGTACCGCGCTGTGTTGTTGAAGACGCGGAG 1602 Query 69795 CATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG-C 69853 ||| || | | ||||| || | ||||| ||||| | ||| || | || ||||| | Sbjct 1601 CATTGGGACCAAGCCATTGGACTCTCCATTCGTTCCCGCTATAAAAGTACC-CTTGCTTC 1543 Query 69854 GAATATTACTAATAGAT-AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912 | ||| | | | | | ||||| ||||| || || |||| || || || ||||| | Sbjct 1542 GGATAC-AGTGAACGTTGAGACCGATTCCACCAGCATTTTTCGATATAAGCGCACACTGC 1484 Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||||||| ||||| || ||||| ||||| || || |||| | ||||| |||| || Sbjct 1483 TTCAATGTATCATAAATGCCCTCAATGCTGTCGTCCTTCATTGTGAGAAGGTAACAACTG 1424 Query 69973 GACATTTGATGATGTATAGTTCCCG-CATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031 ||||| || || || | ||||| | ||||| | ||| |||||||||||||| ||||| Sbjct 1423 GACATCTG-TGGCATAGGGGTCCCGGCGTTAAAAAGTGTGGGAGATGCGTGAGTAAACCA 1365 Query 70032 TTT 70034 || Sbjct 1364 CTT 1362 >seq36919 Length=4449 Score = 114 bits (126), Expect = 2e-20 Identities = 214/312 (69%), Gaps = 8/312 (3%) Strand=Plus/Minus Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937 || |||| ||| || || || | || |||||| |||||||| || ||||| || || Sbjct 2230 TCCTTAATATACGTGTCGATAAGAAGGGAATACATCTCTGAATGAATATTTTCGATTGCA 2171 Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 ||||| || || || ||||| | ||||| | || ||||| ||| || || | || Sbjct 2170 ATCTGGAAGCCATAGAAACAGCGGGCTTCTGGGATCTGTACTTCTTGACTGAAGTTCGCC 2111 Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATA 40057 | | ||||||||| |||||||| || || ||||||||||| || | || | | ||| Sbjct 2110 ACAAGATTTTCATTTACTATTCCGTCGCTTGCGGCAAAAAAGGCAAGGACGTATGAAATG 2051 Query 40058 AAATATTTTTCATCGGGTGTCAATT---TATT-CCAGTCATTGATATCTTTTGATATATC 40113 || | || || | ||| || ||| ||||||| | ||||| | | || Sbjct 2050 AAGTGCTTCTC----GCCGTCCTTTAGAGATTCCCAGTCACCAAGGTCTTTCGCCAAGTC 1995 Query 40114 TACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACG 40173 ||||||||| | |||||||| || ||| | || || ||||| | | ||| |||||| | Sbjct 1994 AACTTCTTCAACGGTCCAAAATGAAGCCACCGCTTTCTTGTAAAACTGCCAGATATCATG 1935 Query 40174 ATATTGTATTGG 40185 ||| || || || Sbjct 1934 ATACTGGATAGG 1923 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 39329 TGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 39388 |||||||||||||| |||||||| || || ||||| || ||||||| ||||| |||||| Sbjct 2951 TGGTATTCACCAACACGTTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGATATGTTTTCC 2892 Query 39389 ATGAAATCAAACGGATTAGT 39408 |||||||| || || || || Sbjct 2891 ATGAAATCGAATGGGTTCGT 2872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685704185210160