Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq36919 150 1e-31 >seq36919 Length=4449 Score = 150 bits (166), Expect = 1e-31 Identities = 223/312 (71%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 43712 CCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACA 43771 || || || |||||||| || ||||| | ||||| ||||| ||| ||||||||||| Sbjct 1923 CCTATCCAGTATCATGATATCTGGCAGTTTTACAAGAAAGCGGTGGCTTCATTTTGGACC 1982 Query 43772 GCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAA--ACCACAAG 43829 | ||||||||||| ||| | |||||| | | | ||| | |||| || | || Sbjct 1983 GTTGAAGAAGTTGACTTGGCGAAAGACCTTGGTGACTGGGAATCTCTAAAGGACGGCGAG 2042 Query 43830 AAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATG 43889 || || || || || | || | || |||||||| || |||||||| ||||| |||| Sbjct 2043 AAGCAC--TTCATTTCATACGTCCTTGCCTTTTTTGCCGCAAGCGACGGAATAGTAAATG 2100 Query 43890 AAAATTTGGTTAGTCGGTTTGCG--CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTA 43947 ||||| | || | || | | |||||||| || | |||||||| || ||||| || Sbjct 2101 AAAATCTTGT--GGCGAACTTCAGTCAAGAAGTACAGATCCCAGAAGCCCGCTGTTTCTA 2158 Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATAC 44007 ||| || || ||||| || |||||||||||||| || ||||| ||||| || || || Sbjct 2159 TGGCTTCCAGATTGCAATCGAAAATATTCATTCAGAGATGTATTCCCTTCTTATCGACAC 2218 Query 44008 GTACATCAAAGA 44019 ||| || || || Sbjct 2219 GTATATTAAGGA 2230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396776416565470