Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq31935 105 2e-17 >seq31935 Length=5035 Score = 105 bits (116), Expect = 2e-17 Identities = 204/297 (69%), Gaps = 8/297 (3%) Strand=Plus/Plus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 |||||| |||| || ||||||||| || || |||||||| ||||| || ||| || Sbjct 1596 CCAATGCTCCGCGTCTTCAACAACACAGCGCGGTACGTCGACCAAGGTGGAAACAAGCGA 1655 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTACTG 255100 ||||| || ||| | || ||| ||||||| |||||| | |||||| | ||| || | Sbjct 1656 CCAGGTGCCTTCGCGATTTACTTGGAGCCATGGCACCCAGACATTCTGCAGTTCGTAGAG 1715 Query 255101 CTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTCTGG 255160 || | | || || ||| |||| ||| | || || || | | || ||| | ||| Sbjct 1716 CTACGCAAAAACACTGGCGCCGAAGAGACTAGAGCTCGTGATCTTTTCATGGCTCTTTGG 1775 Query 255161 TGCTGC-GATCTGTTTATGCGACGCGTGGAACGAG---ACGAGACCTGGAGCCTCATGTG 255216 | | | || | ||||||||||||||| |||| |||| | |||| || ||| Sbjct 1776 -GTTCCTGACTTATTTATGCGACGCGTG---CGAGACAACGACAAGTGGACACTTATGGA 1831 Query 255217 TCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTA 255273 ||| || | || ||||| |||| | ||||||||| || |||||||| |||| Sbjct 1832 TCCTCACGAGTGTCCAGGTCTTTTCGATTGTTGGGGTGAAGAATTTGAAAAGTTGTA 1888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1585480939236830