Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq31935 158 1e-33 >seq31935 Length=5035 Score = 158 bits (174), Expect = 1e-33 Identities = 310/456 (68%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 19167 AGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACG 19226 |||| || || || ||| | ||||| || || ||||| | || || ||||| |||| Sbjct 1339 AGACTTATGAACTCATGTCCGGGAAGTGGTTTACTCACGCATCTCCCACACTTTTTAACG 1398 Query 19227 CCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCA 19286 |||| || | || |||||||| || |||| ||| | | |||||||| ||||||| Sbjct 1399 CCGGGACCCCTATGCCACAGATGTCCAGTTGTTACCTTCTCACAATGAAGGACGACAGCA 1458 Query 19287 TTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTA 19346 |||||||||| || || || | ||| |||| |||| || || || | || || | Sbjct 1459 TTGAGGGCATTTATGATACATTGAAGCAGTGTGCGCTTATATCGAAAAATGCTGGTGGAA 1518 Query 19347 TCGGGATCCACTGCTCGAA-TATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGA 19405 |||| || || | || |||||| | ||||| || || ||||| ||| Sbjct 1519 TCGGTCTCAAC-GTTCACTGTATCCGAAGCAAGGGTACTTTTATAGCGGGAACGAATGGA 1577 Query 19406 GTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAAC 19465 | || | || | ||||||||||||||||||||||||||||| || |||||||| || Sbjct 1578 GAGTCCAATGGCTTGGTCCCAATGCTCCGCGTCTTCAACAACACAGCGCGGTACGTCGAC 1637 Query 19466 CAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGAC 19525 || || || ||| || || | ||||| || ||| | |||||||||||| | ||| Sbjct 1638 CAAGGTGGAAACAAGCGACCAGGTGCCTTCGCGATTTACTTGGAGCCATGGCACCCAGAC 1697 Query 19526 GTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGAC 19585 | || | ||| | || || ||| ||| || | ||| |||| | ||| || Sbjct 1698 ATTCTGCAGTTCGTAGAGCTACGCAAAAACACTGGCGCCGAAGAGACTAGAGCTCGTGAT 1757 Query 19586 CTCTTCACGGCCTTGTGGATTCCGGACCTATTCATG 19621 || |||| ||| | ||| |||| ||| |||| ||| Sbjct 1758 CTTTTCATGGCTCTTTGGGTTCCTGACTTATTTATG 1793 Score = 129 bits (142), Expect = 6e-25 Identities = 313/466 (67%), Gaps = 10/466 (2%) Strand=Plus/Minus Query 79383 CATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTC 79442 ||| || | ||| || | ||| || ||| |||| || || || | |||| ||| | Sbjct 1793 CATAAATAAGTCAGGAACCCAAAGAGCCATGAAAAGATCACGAGCTCTAGTCTCTTCGGC 1734 Query 79443 GCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 ||| ||| || ||||| | || | || ||||| | |||||| ||||||| || Sbjct 1733 GCCAGTGTTTTTGCGTAGCTCTACGAACTGCAGAATGTCTGGGTGCCATGGCTCCAAGTA 1674 Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562 || ||||| | ||| |||||| || || |||| ||||||||| || |||||||| Sbjct 1673 AATCGCGAAGGCACCTGGTCGCTTGTTTCCACCTTGGTCGACGTACCGCGCTGTGTTGTT 1614 Query 79563 GAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCG-TCCCGTTGATTCGTG 79621 ||| || |||||||| || || | ||| | || | || |||| ||||| | || | Sbjct 1613 GAAGACGCGGAGCATTGGGACCAAGCCATTGGACTCTCCATTCGTTCCCGCT-ATAAAAG 1555 Query 79622 TACCGCTCGC-CCGAAT---GTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAG 79677 |||| || || || || || || | || || ||||| || || | || || Sbjct 1554 TACC-CTTGCTTCGGATACAGT--GAAC-GTTGAGACCGATTCCACCAGCATTTTTCGAT 1499 Query 79678 ATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCG 79737 || |||| |||| ||| | || || || |||||||| || |||||||||||| | | Sbjct 1498 ATAAGCGCACACTGCTTCAATGTATCATAAATGCCCTCAATGCTGTCGTCCTTCATTGTG 1439 Query 79738 ACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTC 79797 | ||| | || || ||||||||||| | || |||||||| || || || || | Sbjct 1438 AGAAGGTAACAACTGGACATCTGTGGCATAGGGGTCCCGGCGTTAAAAAGTGTGGGAGAT 1379 Query 79798 GCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGA 79843 ||||| || || |||| | ||| || || || |||| | ||| Sbjct 1378 GCGTGAGTAAACCACTTCCCGGACATGAGTTCATAAGTCTACATGA 1333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547562865771360