Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq31935 140 4e-28 seq3235 105 7e-18 seq10820 100 3e-16 >seq31935 Length=5035 Score = 140 bits (154), Expect = 4e-28 Identities = 301/439 (69%), Gaps = 12/439 (3%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| ||||| ||||| | || || || || ||||| || || | || |||||| Sbjct 1362 AAGTGGTTTACTCACGCATCTCCCACACTTTTTAACGCCGGGACCCCTATGCCACAGATG 1421 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || || || | ||| | | |||||||| ||| || || ||||| || || || | Sbjct 1422 TCCAGTTGTTACCTTCTCACAATGAAGGACGACAGCATTGAGGGCATTTATGATACATTG 1481 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGT- 53445 ||| ||||||| | || || || | ||||| |||||| || || | || | || Sbjct 1482 AAGCAGTGTGCGCTTATATCGAAAAATGCTGGTGGAATCGGTCTCAAC-GTTC-ACTGTA 1539 Query 53446 -CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504 ||| || || || || ||| ||||| || | || |||| | || || | Sbjct 1540 TCCGAAGCAAGGGTACTTTTATAGCGGGAACGAATGGAGAGTCCAATGGCTTGGTCCCAA 1599 Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG-CAAG 53563 |||||||||||||||||||||| || ||||||||| |||| ||||| ||||| | || Sbjct 1600 TGCTCCGCGTCTTCAACAACACAGCGCGGTACGTCGACCAAGGTGGAAACAAGCGACCAG 1659 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 | | | ||||| || ||| | ||||| |||||| | |||||| || |||| | ||||| Sbjct 1660 GTG-CCTTCGCGATTTACTTGGAGCCATGGCACCCAGACATTCTGCAGTTCGTAGAGCTA 1718 Query 53624 CGTCTGAATCA-GGGTGACGAAGAGA--TGCGCTGCCGTGACCTGTTTACAGCTCTGTGG 53680 || | || || || | |||||||| | ||| ||||| || || | ||||| ||| Sbjct 1719 CG-CAAAAACACTGGCGCCGAAGAGACTAGAGCT--CGTGATCTTTTCATGGCTCTTTGG 1775 Query 53681 ATTCCGGACCTCTTCATGC 53699 |||| ||| | || |||| Sbjct 1776 GTTCCTGACTTATTTATGC 1794 >seq3235 Length=16963 Score = 105 bits (116), Expect = 7e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 118109 TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATG 118168 || || || |||||||| | || ||| | ||| |||| ||| | | ||| || || Sbjct 8995 TGCAGTCCCAGGATCTTGATGAGATTGTTGATCTCCGCATTCTCCATAATCTGCTTGCTG 9054 Query 118169 GTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGG 118228 | ||| || || || ||| || | ||||| ||||| |||||||||||| | |||||| Sbjct 9055 GAGGCCTCTCGCACATTGAGCAGTTTACCGCGCAGGGGAAACACGCCATAACGGTCACGC 9114 Query 118229 CCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGT 118281 ||||| |||||||| ||||||| ||| || | ||| || || || ||||| || Sbjct 9115 CCCACCACGCTCAACCCGGCAACAGCCAGAGTCTTGGCTGAATCGCCCTCTGT 9167 Score = 89.7 bits (98), Expect = 6e-13 Identities = 170/247 (69%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 152875 TGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACC 152934 || || || |||||||| |||| ||| | ||| |||| || | | ||| || Sbjct 8995 TGCAGTCCCAGGATCTTGATGAGATTGTTGATCTCCGCATTCTCCATAATCTGCTTGCTG 9054 Query 152935 GTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCC-GAACGCGTTGCG 152993 | ||| || || |||||| || | || || || || ||||||||||| |||| || || Sbjct 9055 GAGGCCTCTCGCACATTGAGCAGTTTACCGCGCAGGGGAAACACGCCATAACG-GTCACG 9113 Query 152994 GCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAAT 153053 || || ||||||| ||||||| ||| || | || || || || ||||| |||| || Sbjct 9114 CCCCACCACGCTCAACCCGGCAACAGCCAGAGTCTTGGCTGAATCGCCCTCTGTGAGGAT 9173 Query 153054 AAGCGTACAGTCGTGAGACCGA----TGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGG 153109 ||||||||| ||| | || | || || || ||||||||| || || |||| Sbjct 9174 CAGCGTACAG----GAGGCGGAGTTTTTGGTGCCCGCGTCGTTGGCGTCATCCAGTTTGG 9229 Query 153110 GGATTCC 153116 |||| || Sbjct 9230 GGATGCC 9236 >seq10820 Length=10173 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 ||| ||||||||| | |||| |||||||||| | ||| ||| | || |||| | Sbjct 2700 CAACAAACTCGCGCACTGTGTGAGTCTCTCCAGATGAAATGACATAATCAACTGGTTCCT 2641 Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCT 159058 ||||| |||||||||||||| || | |||||| || | |||| |||||||||||| | Sbjct 2640 TTTGTTGTAGCATGAGCCACATTGCGTAGACGTAGTCTTCGGCGTAACCCCAGTCGCGTT 2581 Query 159059 TGGCATCCATGTTCCCGAGCTCGAT 159083 |||||| | ||| || ||||| || Sbjct 2580 TGGCATTTAGGTTGCCCAGCTCAAT 2556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546256360981200