Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq58369 120 2e-22 seq73473 105 4e-18 seq36821 104 1e-17 seq8609 104 1e-17 >seq58369 Length=2743 Score = 120 bits (132), Expect = 2e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| |||| ||| || || |||||||||||||| || || || || || || Sbjct 489 AGACGCAAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAGAGTACGA 430 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| || ||||| || || | |||||||||||||| || | |||||| Sbjct 429 CCATCTTCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGGATCCCCTCC 370 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | || ||| | ||||| ||| | || || |||| ||| Sbjct 369 TTATCT-TGAATTTTAGCCTTCACGTTCTCAATTGAGTCACTGGGTTCGACCTCCAGGGT 311 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || || || | || ||||||||||| |||||| Sbjct 310 AATCGTCTTGCCAGTAAGTGTCTTCACAAAAATTTGCATG 271 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||||| ||||| ||| ||||| ||| ||||| || || || || || Sbjct 1182 CCGCCACGAAGACGCAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGAG 1123 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| |||||||||||||| ||||| | || ||||||||||| || Sbjct 1122 AGCGTGCGGCCATCTTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGG 1063 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||| || ||| |||||| || | | ||| | ||| | || || Sbjct 1062 ATACCCTCTTTATCTTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTGGGTTCGACC 1003 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || ||||| || || ||||| || || || |||||||| Sbjct 1002 TCCAGAGTAATGGTTTTGCCTGTCAACGTCTTAACGAATATCTGCAT 956 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||| ||| |||||| |||||||||||||||||| || || || || ||| | ||||| Sbjct 252 ACCAGATGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGAGAGGGTGCGCCCATCTTCG 193 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 |||||||| ||||| || || | ||||||||||| || || | ||||| |||||| | Sbjct 192 AGTTGTTTGCCGGCGAAAATCAGTCGCTGTTGGTCTGGTGGTATCCCCTCTTTGTCTTGG 133 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || | ||| || | || | ||| ||| || |||| || || ||||| Sbjct 132 ATC-TTGGCTTTGACATTCTCGATCGAGTCACTAGGCTCGACCTCCAAAGTGATAGTTTT 74 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || |||||||| Sbjct 73 GCCAGTCAAAGTCTTAACGAAGATCTGCAT 44 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| |||| ||||||||| |||||||| ||||| || || ||||| || || Sbjct 945 AGACGCAAGACCAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTGCGG 886 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||||||||| || || | |||||||||||||| || | || ||| Sbjct 885 CCATCTTCGAGTTGTTTACCGGCGAAGATCAGTCGCTGTTGGTCCGGGGGGATACCTTCC 826 Query 34609 TTGTCTGTGATCTT 34622 || ||| |||||| Sbjct 825 TTATCTTGGATCTT 812 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| ||| ||||| ||| |||||||| || ||||| || || || || Sbjct 717 AGCCGCAGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTACGG 658 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || ||||||||||| || || || | | || || ||||| || | || || Sbjct 657 CCATCCTCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTCT 598 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| || | ||| | ||| | || || |||| ||| Sbjct 597 TTGTCTTGGAT-TTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCGACCTCCAGGGT 539 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||||| || | || ||||||||||||||||| Sbjct 538 AATCGTCTTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 >seq73473 Length=1996 Score = 105 bits (116), Expect = 4e-18 Identities = 158/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||||| || || |||||| || ||||| ||||| || || || || Sbjct 1621 AGACGCAGGACCAAATGCAGTGTAGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGG 1562 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| |||||||||||||| || || || || || ||||| || || | |||||| Sbjct 1561 CCGTCTTCGAGTTGTTTACCGGCGAAAATGAATCGTTGCTGGTCTGGTGGGATTCCCTCT 1502 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| ||| || | || || | || | ||| | | | || || || | | Sbjct 1501 TTGTCCTAAATC-TTAGCCTTGACATTCTCGATCGAGTCGCTAGGT-TCAACCTCTAGAG 1444 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA 34705 | || ||||| || || ||||| |||||||||||||||| Sbjct 1443 TAATAGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCA 1405 >seq36821 Length=4459 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| |||| ||| | || ||| ||||| ||||| ||||| || || || || Sbjct 1557 AGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGG 1498 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || |||||||||||||| || |||| | ||||||||| || || | ||| ||| Sbjct 1497 CCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCC 1438 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | ||||| | ||| | ||| | ||| || || | || Sbjct 1437 TTGTCCTGGATC-TTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGT 1379 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || ||||| ||||| |||||||| Sbjct 1378 AATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| |||| ||| | || ||| ||||| ||||| ||||| || || || || Sbjct 10440 AGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGG 10381 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || |||||||||||||| || |||| | ||||||||| || || | ||| ||| Sbjct 10380 CCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCC 10321 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | ||||| | ||| | ||| | ||| || || | || Sbjct 10320 TTGTCCTGGATC-TTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGT 10262 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || ||||| ||||| |||||||| Sbjct 10261 AATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314191464904502