Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq73473 156 4e-33 seq58369 156 4e-33 seq36821 149 5e-31 seq8609 149 5e-31 seq7124 145 7e-30 seq36647 129 5e-25 seq79732 109 5e-19 >seq73473 Length=1996 Score = 156 bits (172), Expect = 4e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26989 TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCG 27048 ||||||| ||||| || || |||| ||||| |||||||||| || || ||||| || Sbjct 1405 TGCAGATTTTTGTGAAGACGTTGACTGGCAAAACTATTACTCTAGAGGTTGAACCTAGCG 1464 Query 27049 ACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAAC 27108 ||||||| |||| ||||| || ||| | |||||||| || || ||||| || || | Sbjct 1465 ACTCGATCGAGAATGTCAAGGCTAAGATTTAGGACAAAGAGGGAATCCCACCAGACCAGC 1524 Query 27109 AGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACA 27168 | || || || | |||||| |||||| | |||||| | ||| | || |||||||||| Sbjct 1525 AACGATTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGCACCCTCTCTGATTACAACA 1584 Query 27169 TTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || |||||||| || | |||||||| ||||| | || |||||||| Sbjct 1585 TCCAGAAGGAGTCTACACTGCATTTGGTCCTGCGTCTCCGTGGTGGCAT 1633 >seq58369 Length=2743 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || || || |||||| | ||||| || || || ||||| Sbjct 271 CATGCAAATTTTTGTGAAGACACTTACTGGCAAGACGATTACCCTGGAGGTCGAACCCAG 330 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| ||||||| || || ||||||||||| || || || || ||||| || || Sbjct 331 TGACTCAATTGAGAACGTGAAGGCTAAAATTCAAGATAAGGAGGGGATCCCACCGGACCA 390 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| ||| | ||||| || || | ||||| ||||| Sbjct 391 ACAGCGACTGATTTTCGCCGGCAAGCAACTCGAAGATGGTCGTACTCTATCCGACTACAA 450 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||| || ||| ||||| |||| |||||| | || ||||| || Sbjct 451 CATTCAAAAGGAATCAACCCTACATCTGGTCTTGCGTCTCCGTGGTGGGAT 501 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| ||||| |||| ||| | || || || || Sbjct 44 ATGCAGATCTTCGTTAAGACTTTGACTGGCAAAACTATCACTTTGGAGGTCGAGCCTAGT 103 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| |||| |||||| || || ||||||||||| || |||||||| || ||| Sbjct 104 GACTCGATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGGATACCACCAGACCAA 163 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||||||| | ||||| | ||| | || || || ||| Sbjct 164 CAGCGACTGATTTTCGCCGGCAAACAACTCGAAGATGGGCGCACCCTCTCTGACTATAAC 223 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || | ||| |||| | | | || |||||||| Sbjct 224 ATTCAAAAGGAGTCCACTCTGCATCTGGTCCTCAGGCTCCGAGGTGGCAT 273 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || ||| | ||||| || || || ||||| Sbjct 500 ATGCAGATTTTTGTGAAGACCCTGACTGGTAAGACGATTACCCTGGAGGTCGAACCCAGT 559 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||||| |||||| ||||| ||||||||||||||||| || || ||||| Sbjct 560 GACTCTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATCCCCCCGGATCAG 619 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| || |||||| | || || | || | || |||||||| Sbjct 620 CAAAGACTCATCTTCGCTGGTAAACAACTCGAGGATGGCCGTACGCTCTCTGATTACAAT 679 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| ||||| || | ||| |||| |||| | || |||||||| Sbjct 680 ATTCAAAAAGAGTCTACTCTGCATCTGGTGCTGCGGCTCCGCGGTGGCAT 729 Score = 113 bits (124), Expect = 4e-20 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || |||| ||||| | |||||||| || || ||||| Sbjct 956 ATGCAGATATTCGTTAAGACGTTGACAGGCAAAACCATTACTCTGGAGGTCGAACCCAGT 1015 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || || || || ||||| ||||| || || || || || ||| Sbjct 1016 GACTCCATTGAAAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATCCCCCCGGACCAA 1075 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | |||| |||||| |||||| | ||||| | || | ||||| ||||| Sbjct 1076 CAACGACTGATATTCGCCGGTAAACAACTAGAAGATGGCCGCACGCTCTCCGACTACAAT 1135 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAA 27219 || ||||| ||||| || | ||| |||| ||||| | || || || |||| Sbjct 1136 ATCCAAAAAGAGTCTACTCTGCATCTGGTGCTGCGTCTTCGTGGCGG-ATAA 1186 >seq36821 Length=4459 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| |||||| |||||||||| || || || || | Sbjct 1340 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACTATTACTCTAGAGGTTGAGCCCAGC 1399 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||||| || || || || || ||||| ||||| || || || || ||| Sbjct 1400 GACTCGATTGAGAATGTTAAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCAA 1459 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | |||| | |||||| |||||| | || || | || | || ||||||||| Sbjct 1460 CAGAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAAC 1519 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| ||||| || || ||| |||| |||||| | || ||||| Sbjct 1520 ATCCAAAAAGAGTCTACATTGCATCTGGTCTTGCGTCTCCGTGGTGG 1566 >seq8609 Length=11408 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| |||||| |||||||||| || || || || | Sbjct 10223 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACTATTACTCTAGAGGTTGAGCCCAGC 10282 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||||| || || || || || ||||| ||||| || || || || ||| Sbjct 10283 GACTCGATTGAGAATGTTAAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCAA 10342 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | |||| | |||||| |||||| | || || | || | || ||||||||| Sbjct 10343 CAGAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAAC 10402 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| ||||| || || ||| |||| |||||| | || ||||| Sbjct 10403 ATCCAAAAAGAGTCTACATTGCATCTGGTCTTGCGTCTCCGTGGTGG 10449 >seq7124 Length=12460 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || ||| | || ||||||||| Sbjct 7335 CATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATAACTTTGGAGGTGGAACCGAG 7394 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||||||| |||| || || ||| ||||| ||||| |||||||| || || ||||| Sbjct 7395 CGACTCGATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGATCA 7454 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || || || || ||||| ||| || || | || || ||||| Sbjct 7455 ACAGCGCCTGATCTTTGCTGGTAAGCAGTTGGAGGACGGTCGCACACTCTCAGACTACAA 7514 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || |||||||| | || ||||| | ||| |||| ||||| Sbjct 7515 TATCCAGAAAGAGTCGACTCTGCACTTGGTGCTCCGTCTGCGTGGTGG 7562 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 ||| ||||| || ||||| || || ||||| |||||| | || || | || |||||||| Sbjct 7104 CGCGATGCAAATCTTTGTGAAGACACTGACTGGCAAGACCATCACGTTGGAGGTGGAACC 7163 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 | ||||| || || | || || ||| ||||| || || |||||||| || || || Sbjct 7164 GAGTGACTCTATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCAGA 7223 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | || ||||| || |||| ||| || || | || || || Sbjct 7224 CCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGTCGTACACTCTCGGACTA 7283 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || |||||||||||| | || ||||| ||||| | || |||||||| Sbjct 7284 CAATATCCAGAAGGAGTCGACCCTGCACTTGGTACTGCGTCTACGCGGTGGCAT 7337 >seq36647 Length=4477 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 ||| |||||||| ||||| || || ||||| |||||| | || || | || ||||| || Sbjct 4135 CGCTATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACGTTGGAGGTGGAGCC 4194 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 | |||||||| || | || || ||| ||||| || || ||||| || || || || Sbjct 4195 GAGTGACTCGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCGGA 4254 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || |||||| | || | ||| ||||| || |||||||| | || | || || || Sbjct 4255 CCAGCAGCGTCTGATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGTACGCTGTCTGACTA 4314 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||||||||| | || ||||| | ||| |||| |||||||| Sbjct 4315 CAATATCCAGAAGGAGTCGACTCTGCACTTGGTACTCCGTCTGCGTGGTGGCAT 4368 >seq79732 Length=1757 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||||||||| ||||| || || || ||| |||| || || || || || || || Sbjct 1368 CATGCAGATATTTGTCAAAACCCTAACAGGGAAGACTATAACCCTCGAGGTTGAGCCTTC 1309 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| || || | || || || ||||| |||||||| || || || || || || Sbjct 1308 GGACTCAATCGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCAGACCA 1249 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || |||| | |||||||||||| | || || | || | || ||||| || Sbjct 1248 GCAACGGCTAATCTTCGCCGGCAAACAGCTTGAGGATGGACGCACTCTGTCGGATTATAA 1189 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||||||||| ||| | || |||| Sbjct 1188 TATCCAAAAGGAGTCCACCCTTCACCTGGT 1159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434155694474880