Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq79732 185 2e-41 seq58369 149 1e-30 seq7124 143 6e-29 seq36821 127 5e-24 seq8609 127 5e-24 seq61938 91.5 3e-13 >seq79732 Length=1757 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| ||||| |||||||| |||||||| |||||||| |||||||||| || || Sbjct 1146 ACGAAGTCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATATTATAATCCGACAGAGT 1205 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||| || ||||| ||||| |||||||| || ||||| ||||| ||||| | || Sbjct 1206 GCGTCCATCCTCAAGCTGTTTGCCGGCGAAGATTAGCCGTTGCTGGTCTGGAGGGATACC 1265 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || |||||||| ||||| || || |||||||| | ||| || ||||||||||| Sbjct 1266 CTCTTTGTCCTGAATCTTGGCCTTTACATTTTCGATTGAGTCCGAAGGCTCAACCTCGAG 1325 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || || || ||||| | |||||| Sbjct 1326 GGTTATAGTCTTCCCTGTTAGGGTTTTGACAAATATCTGCAT 1367 >seq58369 Length=2743 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| || || ||||| || || ||||||||||| || || | |||||| | |||||||| Sbjct 937 GACCAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTC 878 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || || || |||||||| || || |||||||| || || | |||||||| || || Sbjct 877 GAGTTGTTTACCGGCGAAGATCAGTCGCTGTTGGTCCGGGGGGATACCTTCCTTATCTTG 818 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||| || || |||||||| | |||| | ||| ||||| | ||| |||||||| Sbjct 817 GATCTTGGCCTTGACATTTTCGATCGAGTCACTGGGTTCGACCTCCAAAGTAATCGTCTT 758 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||||||||| | ||||| Sbjct 757 ACCAGTCAGGGTCTTTACAAAGATTTGCAT 728 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || || ||||| || || ||||||||||| ||||| |||||||| || | ||||| Sbjct 264 CGGAGCCTGAGGACCAGATGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGAGAGGGTG 205 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| || || ||||| ||||| || || || |||||||| || || | || Sbjct 204 CGCCCATCTTCGAGTTGTTTGCCGGCGAAAATCAGTCGCTGTTGGTCTGGTGGTATCCCC 145 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| |||||||| ||| || || ||||| | |||| || ||||| | | Sbjct 144 TCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATCGAGTCACTAGGCTCGACCTCCAAA 85 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || | |||||| || || | |||||| Sbjct 84 GTGATAGTTTTGCCAGTCAAAGTCTTAACGAAGATCTGCAT 44 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || || ||||| |||||||||||||| || || || | || || Sbjct 1177 ACGAAGACGCAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGAGAGCGT 1118 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || || || || ||||| || || ||||||||||| || || | || Sbjct 1117 GCGGCCATCTTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGGATACC 1058 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || || || |||||||| ||||| ||||| |||| |||| | ||| ||||| || Sbjct 1057 CTCTTTATCTTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTGGGTTCGACCTCCAG 998 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| || || || || || | ||||| || || | ||||||| Sbjct 997 AGTAATGGTTTTGCCTGTCAACGTCTTAACGAATATCTGCATT 955 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || ||||| ||||||||||| || || ||||| | || || | ||||| Sbjct 711 AGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTACGGCCATCC 652 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || |||||||| || | ||| || || || || | ||||| ||||| Sbjct 651 TCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTCTTTGTCT 592 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || || || | |||| | ||| ||||| || || |||||| Sbjct 591 TGGATTTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCGACCTCCAGGGTAATCGTC 532 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 531 TTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 >seq7124 Length=12460 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || ||||| || || |||| || || | || || Sbjct 7319 AGTACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCCGAGAGTGTACGACCGTCC 7260 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| ||||||| |||||||| ||| Sbjct 7259 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGAGGAATGCCTTCCTTATCC 7200 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| ||||| |||||||| | |||| ||| ||||| | ||||| ||| Sbjct 7199 TGAATCTTTGCCTTCACATTTTCGATAGAGTCACTCGGTTCCACCTCCAACGTGATGGTC 7140 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | ||||| Sbjct 7139 TTGCCAGTCAGTGTCTTCACAAAGATTTGCAT 7108 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| |||||||| ||||| || || || | || || | || || Sbjct 7547 AGCACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTCTGAGAGTGTGCGACCGTCC 7488 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || || ||||| ||||| ||||| || ||||||| |||||||||||| Sbjct 7487 TCCAACTGCTTACCAGCAAAGATCAGGCGCTGTTGATCTGGAGGAATGCCTTCCTTGTCC 7428 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 || |||||| || || || ||||| | ||| ||| ||| ||||| | ||| || Sbjct 7427 TGAATCTTTGCCTTTACATTCTCGATCGAGTC---GCTCGGTTCCACCTCCAAAGTTATG 7371 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| ||||| | |||||| Sbjct 7370 GTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 7336 >seq36821 Length=4459 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| || || | || ||||||||||||||||| ||||| | || || | ||||| || Sbjct 1549 GACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTC 1490 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || || || |||||||| || | |||||||| || || | ||||||||||||||| Sbjct 1489 GAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTGTCCTG 1430 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||| || || || || || | ||| | |||||||| ||||| || ||||| Sbjct 1429 GATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATAGTCTT 1370 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | || || ||||| | |||||| Sbjct 1369 GCCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| || || | || ||||||||||||||||| ||||| | || || | ||||| || Sbjct 10432 GACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTC 10373 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || || || |||||||| || | |||||||| || || | ||||||||||||||| Sbjct 10372 GAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTGTCCTG 10313 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||| || || || || || | ||| | |||||||| ||||| || ||||| Sbjct 10312 GATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATAGTCTT 10253 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | || || ||||| | |||||| Sbjct 10252 GCCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 >seq61938 Length=2545 Score = 91.5 bits (100), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 210996 TGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 ||||| ||||||| |||||||| ||||| |||||| ||||| || ||||| | |||| Sbjct 3 TGGTCTGGAGGAATACCTTCCTTATCCTGAATCTTTGCCTTCACATTCTCGATCGAGTCA 62 Query 211056 GAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| | ||||| ||||| || || || ||||||||||| | ||||||| Sbjct 63 CTCGGCTCAACCTCCAACGTGATGGTCTTGCCAGTCAGTGTCTTTACAAAGATCTGCATT 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157068404719310