Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq36821 111 1e-19 seq8609 111 1e-19 seq79732 107 1e-18 seq58369 102 5e-17 seq73473 95.1 8e-15 >seq36821 Length=4459 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||| | || || || || || ||||| || ||||| ||| Sbjct 1340 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACTATTACTCTAGAGGTTGAGCCCAGC 1399 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | |||| ||| |||| | || | | ||||| ||||| | || ||||| || Sbjct 1400 GACTCGATTGAGAATGTTAAGGCTAAGA-TCCAGGACAAGGAAGGAATCCCCCCAGACCA 1458 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | |||| || ||||| |||||||| || || | ||||| | |||||||| Sbjct 1459 ACAGAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAA 1518 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| ||||||||||| ||||| ||| | || || Sbjct 1519 CATCCAAAAAGAGTCTACATTGCATCTGGTCTT 1551 >seq8609 Length=11408 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||| | || || || || || ||||| || ||||| ||| Sbjct 10223 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACTATTACTCTAGAGGTTGAGCCCAGC 10282 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | |||| ||| |||| | || | | ||||| ||||| | || ||||| || Sbjct 10283 GACTCGATTGAGAATGTTAAGGCTAAGA-TCCAGGACAAGGAAGGAATCCCCCCAGACCA 10341 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | |||| || ||||| |||||||| || || | ||||| | |||||||| Sbjct 10342 ACAGAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAA 10401 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| ||||||||||| ||||| ||| | || || Sbjct 10402 CATCCAAAAAGAGTCTACATTGCATCTGGTCTT 10434 >seq79732 Length=1757 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || || || || || || ||||| ||||| | || Sbjct 1367 ATGCAGATATTTGTCAAAACCCTAACAGGGAAGACTATAACCCTCGAGGTTGAGCCTTCG 1308 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | | |||| |||| || ||| |||||||| ||| | || ||||| || Sbjct 1307 GACTCAATCGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCAGACCAG 1248 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || |||| || ||||||||||| || || || | ||||||| | ||||| || Sbjct 1247 CAACGGCTAATCTTCGCCGGCAAACAGCTTGAGGATGGACGCACTCTGTCGGATTATAAT 1188 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| |||||||| Sbjct 1187 ATCCAAAAGGAGTCCAC 1171 >seq58369 Length=2743 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || | || || ||||| |||||| | || || || | | Sbjct 44 ATGCAGATCTTCGTTAAGACTTTGACTGGCAAAACTATCACTTTGGAGGTCGAGCCTAGT 103 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | | || ||| | ||| | || | | |||||||| || |||| ||||| || Sbjct 104 GACTCGATCGAGAATGTCAAAGCCAAGA-TCCAAGACAAAGAGGGGATACCACCAGACCA 162 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||||||||| ||||| | ||||| | || || || Sbjct 163 ACAGCGACTGATTTTCGCCGGCAAACAACTCGAAGATGGGCGCACCCTCTCTGACTATAA 222 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| |||||||| | ||| | || | ||| | ||||| || Sbjct 223 CATTCAAAAGGAGTCCACTCTGCATCTGGTCCTCAGGCTCCGAGGTGG 270 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| |||||||| || | || || ||||| || ||||| || || || ||| Sbjct 955 AATGCAGATATTCGTTAAGACGTTGACAGGCAAAACCATTACTCTGGAGGTCGAACCCAG 1014 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | |||||| | || || || || ||||| ||| | || || || || Sbjct 1015 TGACTCCATTGAAAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATCCCCCCGGACCA 1074 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || | ||||| ||||| |||||||| ||||| | ||||| | ||| ||||| Sbjct 1075 ACAACGACTGATATTCGCCGGTAAACAACTAGAAGATGGCCGCACGCTCTCCGACTACAA 1134 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||||||||| || Sbjct 1135 TATCCAAAAAGAGTCTAC 1152 Score = 89.7 bits (98), Expect = 3e-13 Identities = 143/202 (71%), Gaps = 10/202 (5%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || ||||| || || || || || ||| Sbjct 500 ATGCAGATTTTTGTGAAGACCCTGACTGGTAAGACGATTACCCTGGAGGTCGAACCCAGT 559 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || |||| ||| | ||| | ||||| ||||||||||| | || || ||||| Sbjct 560 GACTCTATTGAGAATGTCAAAGC-CAAAATCCAAGACAAAGAAGGCATCCCCCCGGATCA 618 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA----CGAACGCACTTTAGGCGATT 23785 || | | || || || || |||||||| || || || |||| || | |||| Sbjct 619 GCAAAGACTCATCTTCGCTGGTAAACAACTCGAGGATGGCCGTACGCTCTCT----GATT 674 Query 23786 ACAACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| || Sbjct 675 ACAATATTCAAAAAGAGTCTAC 696 >seq73473 Length=1996 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 |||||||||| || || || | || || ||||| || ||||| || ||||| | | | Sbjct 1405 TGCAGATTTTTGTGAAGACGTTGACTGGCAAAACTATTACTCTAGAGGTTGAACCTAGCG 1464 Query 23672 ACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | | || ||| | || | || | || |||||||| || | || ||||| || Sbjct 1465 ACTCGATCGAGAATGTCAAGGCTAAGATTTAG-GACAAAGAGGGAATCCCACCAGACCAG 1523 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || || ||||| |||||||| ||||||| ||||| | ||||||||| Sbjct 1524 CAACGATTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGCACCCTCTCTGATTACAAC 1583 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| ||| | ||||| || Sbjct 1584 ATCCAGAAGGAGTCTACACTGCATTTGGT 1612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337431659989352