Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq36919 163 2e-35 seq38847 100 2e-16 >seq36919 Length=4449 Score = 163 bits (180), Expect = 2e-35 Identities = 351/528 (66%), Gaps = 35/528 (7%) Strand=Plus/Minus Query 4625 CTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGC 4684 ||| || |||||||| |||| ||||| ||||| |||||||| | || || || || || Sbjct 2448 CTTCTTCAGCCAAAAGATAGACGCAAACGACCCGGAAAAGAAGACCCCCTCCACAGCAGC 2389 Query 4685 AAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--TCTTTAATCCATTTTAATGCC 4742 ||| ||||| | || | || ||| | ||||| || ||||||||| | |||| Sbjct 2388 AAAGGCTACCAGACGCTCCGGAAAAGAG--GACTTTGAGTCACCAATCCATTTGAGTGCC 2331 Query 4743 CAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTT 4799 |||| ||| |||||||| || || |||| || | | || || || | | | ||| Sbjct 2330 CAGTCAGCCTTTTTCTTCACACAAGGAAGGGTCTGCACCGCATTGAACAGGAAGTCACTA 2271 Query 4800 ------------------------TT----TTCAAATGGGTCTTGAATATAAGTGTCTAT 4831 || ||| | ||||| | |||||| ||||| || Sbjct 2270 AACACGAAATAAGAATGGGAGAAATTACCGTTCGATAGGGTCCTTAATATACGTGTCGAT 2211 Query 4832 TAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCA 4891 || ||| |||||| || ||||| |||||||| || |||||||| || || || || || Sbjct 2210 AAGAAGGGAATACATCTCTGAATGAATATTTTCGATTGCAATCTGGAAGCCATAGAAACA 2151 Query 4892 TCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTAT 4951 | ||||||| | || ||||| | || || | | || | ||||| |||||||| Sbjct 2150 GCGGGCTTCTGGGATCTGTACTTCTTGACTGAAGTTCGCCACAAGATTTTCATTTACTAT 2091 Query 4952 ACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTT 5011 ||||| || || |||||||| || | || | || || |||| || ||| | ||| Sbjct 2090 TCCGTCGCTTGCGGCAAAAAAGGCAAGGACGTATGAAATGAAGTGCTTCTCGCCGTCCTT 2031 Query 5012 AAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGA 5071 || || ||||| | ||||| | || |||||||||||||| |||||||| || Sbjct 2030 TAGAGATTCCCAGTCACCAAGGTCTTTCGCCAAGTCAACTTCTTCAACGGTCCAAAATGA 1971 Query 5072 CGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 || ||||||| ||||| | ||| |||||| ||||||| || || Sbjct 1970 AGCCACCGCTTTCTTGTAAAACTGCCAGATATCATGATACTGGATAGG 1923 >seq38847 Length=4243 Score = 100 bits (110), Expect = 2e-16 Identities = 123/167 (74%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 ||||||| |||||| |||| || || ||| |||||| || ||||| |||||||| || Sbjct 1935 GGGTCTTTAATATACATGTCGATAAGAAGGGAATACATCTCTGAATG-ATATTTTCGATT 1993 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 |||||||| || || || || || | |||| || | || | ||| | || || | Sbjct 1994 GCAATCTGGAAGCCATAGAAACAACGGGCTTTTGGGATCTGTAATTCCTGACTGAAGCGC 2053 Query 4929 TCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGC 4975 || || | ||||| |||||||| ||||| || ||||||||||| || Sbjct 2054 TCCACAAGATTTTCATTTACTATTCCGTCGCTTGCTGCAAAAAAGGC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426319416447902