Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq36919 125 1e-23 seq31935 116 5e-21 seq38847 95.1 2e-14 >seq36919 Length=4449 Score = 125 bits (138), Expect = 1e-23 Identities = 216/310 (70%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461 || |||| || || || || | ||| |||||| || || ||||||||||| ||||| Sbjct 2230 TCCTTAATATACGTGTCGATAAGAAGGGAATACATCTCTGAATGAATATTTTCGATTGCA 2171 Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 ||||| || || || ||||| | ||||||| ||||||||| || || || |||| Sbjct 2170 ATCTGGAAGCCATAGAAACAGCGGGCTTCTGGGATCTGTACTTCTTGACTGAA--GTTCG 2113 Query 48522 GC-CAA-ATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAA 48579 | ||| ||| |||||||||||||| || || || |||||||| || | || | | || Sbjct 2112 CCACAAGATTTTCATTTACTATTCCGTCGCTTGCGGCAAAAAAGGCAAGGACGTATGAAA 2053 Query 48580 TAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTA 48639 | || | || ||| | | || | ||||||| | ||||| | | || | Sbjct 2052 TGAAGTGCTTCTCGCCGTCCTTTAGAGATTCCCAGTCACCAAGGTCTTTCGCCAAGTCAA 1993 Query 48640 CTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGT 48699 |||||||| | ||||||||||| ||| | ||||| || || | | ||| |||||| | Sbjct 1992 CTTCTTCAACGGTCCAAAATGAAGCCACCGCTTTCTTGTAAAACTGCCAGATATCATGAT 1933 Query 48700 ATTGGATTGG 48709 | ||||| || Sbjct 1932 ACTGGATAGG 1923 >seq31935 Length=5035 Score = 116 bits (128), Expect = 5e-21 Identities = 292/441 (66%), Gaps = 2/441 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 || ||| |||||| | ||||| | ||| ||||| || || ||||| || | |||| Sbjct 1801 ACGCGTCGCATAAATAAGTCAGGAACCCAAAGAGCCATGAAAAGATCACGAGCTCTAGTC 1742 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| || || || || || || | |||| || ||| || | |||||||| Sbjct 1741 TCTTCGGCGCCAGTGTTTTTGCGTAGCTCTACGAACTGCAGAATGTCTGGGTGCCATGGC 1682 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCG 78182 || | || || || | | || ||||| || || || || || || | || | || Sbjct 1681 TCCAAGTAAATCGCGAAGGCACCTGGTCGCTTGTTTCCACCTTGGTCGACGTACCGCGCT 1622 Query 78183 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAA 78242 ||||| || | || | | |||||| | | || || || |||||| ||||| | Sbjct 1621 GTGTTGTTGAAGACGCGGAGCATTGGGACCAAGCCATTGGACTCTCCATTCGTTCCCGCT 1562 Query 78243 ATATAACTTCCACTTGCG-CGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTT 78301 ||| || | || ||||| || ||| || | | || ||||| || || | || Sbjct 1561 ATAAAAGTACC-CTTGCTTCGGATACAGTGAACGTTGAGACCGATTCCACCAGCATTTTT 1503 Query 78302 AGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT 78361 ||||| || || || | ||||||||||| || || ||||| || ||||| ||| |||| Sbjct 1502 CGATATAAGCGCACACTGCTTCAATGTATCATAAATGCCCTCAATGCTGTCGTCCTTCAT 1443 Query 78362 GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGG 78421 | ||||| |||| || ||||| || | | || || || ||||| | ||| || Sbjct 1442 TGTGAGAAGGTAACAACTGGACATCTGTGGCATAGGGGTCCCGGCGTTAAAAAGTGTGGG 1383 Query 78422 AGATGCATGCGTAAACCATTT 78442 |||||| || |||||||| || Sbjct 1382 AGATGCGTGAGTAAACCACTT 1362 >seq38847 Length=4243 Score = 95.1 bits (104), Expect = 2e-14 Identities = 120/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461 ||||||| || | || || | ||| |||||| || || ||| ||||||| ||||| Sbjct 1938 TCTTTAATATACATGTCGATAAGAAGGGAATACATCTCTGAATGA-TATTTTCGATTGCA 1996 Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 ||||| || || || ||||| | |||| || |||||||| ||| || || || || Sbjct 1997 ATCTGGAAGCCATAGAAACAACGGGCTTTTGGGATCTGTAATTCCTGACTGAAGCGCTCC 2056 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565 | | ||| |||||||||||||| || || || |||||||| || Sbjct 2057 ACAAGATTTTCATTTACTATTCCGTCGCTTGCTGCAAAAAAGGC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693450576692160