Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq58369 125 2e-23 seq36821 118 2e-21 seq8609 118 2e-21 seq79732 109 1e-18 seq73473 102 2e-16 >seq58369 Length=2743 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| |||||||| ||||| ||||| ||||| ||||| ||||| || || | | || | Sbjct 262 GAGCCTGAGGACCAGATGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGAGAGGGTGCG 203 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||||||| || ||| |||||||| || || | ||| ||||| | | || || || Sbjct 202 CCCATCTTCGAGTTGTTTGCCGGCGAAAATCAGTCGCTGTTGGTCTGGTGGTATCCCCTC 143 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || ||||| || || ||||||| |||| | ||| | ||| || || | ||| Sbjct 142 TTTGTCTTGGATCTTGGCTTTGACATTCTCGATCGAGTCACTAGGCTCGACCTCCAAAGT 83 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| || | |||||| ||||||| |||||| Sbjct 82 GATAGTTTTGCCAGTCAAAGTCTTAACGAAGATCTGCAT 44 Score = 116 bits (128), Expect = 9e-21 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| |||||||||||||||||||| ||||| |||| | || | |||||| Sbjct 1167 AGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGAGAGCGTGCGGCCATCT 1108 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| ||| |||||||| || || | || ||||||| | ||| || || || ||| Sbjct 1107 TCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGGATACCCTCTTTATCT 1048 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| | || | | ||| ||| || || || |||||||| Sbjct 1047 TGGATCTTAGCCTTCACATTTTCAATGGAGTC---ACTGGGTTCGACCTCCAGAGTAATG 991 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| || | ||||| ||||| | ||||||| Sbjct 990 GTTTTGCCTGTCAACGTCTTAACGAATATCTGCATT 955 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||||||||||||||| || |||||||| | | || | ||||| Sbjct 711 AGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTACGGCCATCC 652 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || |||||||| || || ||||| |||| | ||| ||||| || ||| Sbjct 651 TCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTCTTTGTCT 592 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| ||||||| |||| | ||| ||| || || || || ||||| Sbjct 591 TGGATTTTGGCTTTGACATTCTCAATAGAGTC---ACTGGGTTCGACCTCCAGGGTAATC 535 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || |||||||| || | |||||| Sbjct 534 GTCTTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 Score = 102 bits (112), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| ||||| || || || || ||||| |||||||| |||| || ||| | |||||||| Sbjct 481 GACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAGAGTACGACCATCTTC 422 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || || |||||||| || || | ||| ||||||| | ||| || ||||| ||||| Sbjct 421 GAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGGATCCCCTCCTTATCTTG 362 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGT 152071 |||||| || || |||| | ||| ||| || || || || ||||| || Sbjct 361 AATTTTAGCCTTCACGTTCTCAATTGAGTC---ACTGGGTTCGACCTCCAGGGTAATCGT 305 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || |||||||| || | ||||| Sbjct 304 CTTGCCAGTAAGTGTCTTCACAAAAATTTGCAT 272 Score = 102 bits (112), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| ||||| ||||| || || |||||||||||||| || | | || | |||||||| Sbjct 937 GACCAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTC 878 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||||||||| || | ||| ||||||| | ||| |||||||| ||||| Sbjct 877 GAGTTGTTTACCGGCGAAGATCAGTCGCTGTTGGTCCGGGGGGATACCTTCCTTATCTTG 818 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGT 152071 || || |||||| | || | ||| ||| || || || | |||||| || Sbjct 817 GATCTTGGCCTTGACATTTTCGATCGAGTC---ACTGGGTTCGACCTCCAAAGTAATCGT 761 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || |||| ||||| Sbjct 760 CTTACCAGTCAGGGTCTTTACAAAGATTTGCAT 728 >seq36821 Length=4459 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| ||||| | |||||||||||||||||||||||||| | | || | ||||| || Sbjct 1549 GACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTC 1490 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||||||||| || ||||| ||||| | | |||||||||||| || || Sbjct 1489 GAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTGTCCTG 1430 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || || ||| |||| | ||| ||| || || ||||||||||| || Sbjct 1429 GATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATAGTCTT 1370 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || | || || || |||| |||||| Sbjct 1369 GCCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| ||||| | |||||||||||||||||||||||||| | | || | ||||| || Sbjct 10432 GACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTC 10373 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||||||||| || ||||| ||||| | | |||||||||||| || || Sbjct 10372 GAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTGTCCTG 10313 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || || ||| |||| | ||| ||| || || ||||||||||| || Sbjct 10312 GATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATAGTCTT 10253 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || | || || || |||| |||||| Sbjct 10252 GCCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 >seq79732 Length=1757 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||||||||| || ||||| || ||||| |||||||| || ||||| | | ||| | Sbjct 1150 AGTCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATATTATAATCCGACAGAGTGCGT 1209 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || ||| ||||||||||| |||| |||||||| | | ||| || || Sbjct 1210 CCATCCTCAAGCTGTTTGCCGGCGAAGATTAGCCGTTGCTGGTCTGGAGGGATACCCTCT 1269 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || ||||| || || ||| | || | ||| ||| ||| || || || || Sbjct 1270 TTGTCCTGAATCTTGGCCTTTACATTTTCGATTGAGTCCGAAGGCTCAACCTCGAGGGTT 1329 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || || || || || || | |||||| Sbjct 1330 ATAGTCTTCCCTGTTAGGGTTTTGACAAATATCTGCAT 1367 >seq73473 Length=1996 Score = 102 bits (112), Expect = 2e-16 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| || |||||||| || |||||||||||||| | | || | || ||| Sbjct 1615 AGGACCAAATGCAGTGTAGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCGTCT 1556 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| |||||||| || | | |||||||| | | |||||| || || || Sbjct 1555 TCGAGTTGTTTACCGGCGAAAATGAATCGTTGCTGGTCTGGTGGGATTCCCTCTTTGTCC 1496 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 | ||| || |||||| |||| | ||| | || || || |||||||||||| Sbjct 1495 TAAATCTTAGCCTTGACATTCTCGATCGAGTCGCTAGGTTCAACCTCTAGAGTAATAGTT 1436 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103 ||||| || | |||||||| || | ||||| Sbjct 1435 TTGCCAGTCAACGTCTTCACAAAAATCTGCA 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151746787641274