Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq7124 138 8e-28 seq58369 116 3e-21 seq36647 111 1e-19 seq79732 98.7 7e-16 seq36821 87.8 1e-12 seq8609 87.8 1e-12 >seq7124 Length=12460 Score = 138 bits (152), Expect = 8e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || |||||| ||||| ||||| || | |||| || |||| ||| Sbjct 7316 ACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCCGAGAGTGTACGACCGTCCTCC 7257 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| |||||||| |||| ||| | |||||||| ||| Sbjct 7256 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGA 7197 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| || | || | ||| | ||||||||||| ||| || ||||| Sbjct 7196 ATCTTTGCCTTCACATTTTCGATAGAGTCACTCGGTTCCACCTCCAACGTGATGGTCTTG 7137 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || |||||||| ||||||||||| Sbjct 7136 CCAGTCAGTGTCTTCACAAAGATTTGCAT 7108 Score = 127 bits (140), Expect = 1e-24 Identities = 157/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || ||| || ||||| ||||| || | |||| ||| |||| || Sbjct 7545 CACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTCTGAGAGTGTGCGACCGTCCTC 7486 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || |||||||||| ||||| ||||||| ||| | |||||||| ||| Sbjct 7485 CAACTGCTTACCAGCAAAGATCAGGCGCTGTTGATCTGGAGGAATGCCTTCCTTGTCCTG 7426 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| | | ||| | || | |||| | ||||||||||| || || |||| Sbjct 7425 AATCTT-TGCCTTTACATTCTCGATCGAGTCGCTCGGTTCCACCTCCAAAGTTATGGTCT 7367 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || || |||||||| ||||| |||||| Sbjct 7366 TGCCAGTCAGCGTCTTCACAAAGATCTGCATG 7335 >seq58369 Length=2743 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || | ||| ||||| || || || ||||||||||||||||| || Sbjct 958 CATTCCACCACGGAGACGCAAGACCAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTC 899 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || || || || || ||||| ||||||| ||||| || || | Sbjct 898 AGAAAGGGTGCGGCCATCTTCGAGTTGTTTACCGGCGAAGATCAGTCGCTGTTGGTCCGG 839 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||||||| || ||||| ||| | || | || | ||| || ||| Sbjct 838 GGGGATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCGATCGAGTCACTGGGTTC 779 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| ||||||||||| || || |||||||| || |||||||||||| Sbjct 778 GACCTCCAAAGTAATCGTCTTACCAGTCAGGGTCTTTACAAAGATTTGCATG 727 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | ||| ||||| || || || |||||||| |||||||| || Sbjct 502 CATCCCACCACGGAGACGCAAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTC 443 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || || | || || || ||||| ||||| || |||| ||||| || || | Sbjct 442 GGATAGAGTACGACCATCTTCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGG 383 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || || || ||||| |||| | || | ||| || || Sbjct 382 TGGGATCCCCTCCTTATCTTGAATTTTAGCCTTCAC-GTTCTCAATTGAGTCACTGGGTT 324 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||| ||||||||||| || || || |||||||| || ||||||||| Sbjct 323 CGACCTCCAGGGTAATCGTCTTGCCAGTAAGTGTCTTCACAAAAATTTGCATG 271 >seq36647 Length=4477 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || |||||| ||||| ||||| || | || || | || ||| Sbjct 4347 ACCAAGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGACAGCGTACGGCCATCTTCC 4288 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || || ||||||| ||||||||| || | ||| | ||||||||| ||| Sbjct 4287 AACTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGAATACCTTCCTTATCCTGA 4228 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| || | || | ||| | |||||||||| ||| || ||||| Sbjct 4227 ATCTTTGCCTTCACATTTTCGATCGAGTCACTCGGCTCCACCTCCAACGTGATGGTCTTG 4168 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||| || || ||||| Sbjct 4167 CCAGTCAGGGTCTTCACAAAAATCTGCAT 4139 >seq79732 Length=1757 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||| | ||||||||||| ||| |||||||||||| || ||||| | || ||| Sbjct 1150 AGTCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATATTATAATCCGACAGAGTGCGT 1209 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || || ||||| || ||||| ||||| | || ||||| |||| ||| | ||| || Sbjct 1210 CCATCCTCAAGCTGTTTGCCGGCGAAGATTAGCCGTTGCTGGTCTGGAGGGATACCCTCT 1269 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || | || | ||| | | || ||||| | || Sbjct 1270 TTGTCCTGAATCTTGGCCTTTACATTTTCGATTGAGTCCGAAGGCTCAACCTCGAGGGTT 1329 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| || || ||||| || || || || |||||| Sbjct 1330 ATAGTCTTCCCTGTTAGGGTTTTGACAAATATCTGCATG 1368 >seq36821 Length=4459 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 ||| ||||| || | || ||| ||||||||||||||||| | ||| ||| | || Sbjct 1552 CAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCATC 1493 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || || || || ||||| ||||| | | ||| || |||| || | |||||||| || Sbjct 1492 CTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTGTC 1433 Query 44245 CGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | ||||| || | || ||| | || | |||| || || ||||| | ||||| | Sbjct 1432 CTGGATCTT-AGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATAG 1374 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAA 44345 |||| || || | ||| || || ||||| ||||| | | ||| Sbjct 1373 TCTTGCCAGTCAAGGTTTTGACAAAGATCTGCATCACGAGAA 1332 >seq8609 Length=11408 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 ||| ||||| || | || ||| ||||||||||||||||| | ||| ||| | || Sbjct 10435 CAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCATC 10376 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || || || || ||||| ||||| | | ||| || |||| || | |||||||| || Sbjct 10375 CTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTGTC 10316 Query 44245 CGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | ||||| || | || ||| | || | |||| || || ||||| | ||||| | Sbjct 10315 CTGGATCTT-AGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATAG 10257 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAA 44345 |||| || || | ||| || || ||||| ||||| | | ||| Sbjct 10256 TCTTGCCAGTCAAGGTTTTGACAAAGATCTGCATCACGAGAA 10215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359374876489398