Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq79732 163 7e-35 seq58369 150 4e-31 seq73473 143 6e-29 seq36821 136 9e-27 seq8609 136 9e-27 seq36647 116 9e-21 seq7124 105 2e-17 >seq79732 Length=1757 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| || ||||| || || || ||||||||||| || || ||| Sbjct 1364 CAGATATTTGTCAAAACCCTAACAGGGAAGACTATAACCCTCGAGGTTGAGCCTTCGGAC 1305 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || || || ||||||||||||||||| || |||||||| ||||||||| Sbjct 1304 TCAATCGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCAGACCAGCAA 1245 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| |||||||| || |||||| | ||||| | |||||||| || Sbjct 1244 CGGCTAATCTTCGCCGGCAAACAGCTTGAGGATGGACGCACTCTGTCGGATTATAATATC 1185 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || || || || | ||||| Sbjct 1184 CAAAAGGAGTCCACCCTTCACCTGGTCCTCAGACT 1150 >seq58369 Length=2743 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| || || || || || ||||| ||||| ||||| ||| | ||| Sbjct 275 CAAATTTTTGTGAAGACACTTACTGGCAAGACGATTACCCTGGAGGTCGAACCCAGTGAC 334 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || |||||||| || || ||||| || || || || ||||| |||||||| || Sbjct 335 TCAATTGAGAACGTGAAGGCTAAAATTCAAGATAAGGAGGGGATCCCACCGGACCAACAG 394 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| || |||||||| || || ||||||||||| | ||||| |||| || ||| | Sbjct 395 CGACTGATTTTCGCCGGCAAGCAACTCGAAGATGGTCGTACTCTATCCGACTACAACATT 454 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| |||||||| || ||||| || ||| | ||| Sbjct 455 CAAAAGGAATCAACCCTACATCTGGTCTTGCGTCTC 490 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || || || || || ||||| ||||| ||||| ||| | ||| Sbjct 503 CAGATTTTTGTGAAGACCCTGACTGGTAAGACGATTACCCTGGAGGTCGAACCCAGTGAC 562 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| |||||| || || || ||||||||||| ||||| ||||| |||||| Sbjct 563 TCTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATCCCCCCGGATCAGCAA 622 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||| || ||||| ||||| ||||| | || || | ||||| || | Sbjct 623 AGACTCATCTTCGCTGGTAAACAACTCGAGGATGGCCGTACGCTCTCTGATTACAATATT 682 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||| || || |||||||| || Sbjct 683 CAAAAAGAGTCTACTCTGCATCTGGT 708 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || ||||| || | ||||| ||| | ||| Sbjct 731 CAAATCTTTGTAAAGACCCTGACTGGTAAGACGATTACTTTGGAGGTCGAACCCAGTGAC 790 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || ||||| ||||| || || || ||||| ||||| |||||||| || Sbjct 791 TCGATCGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCGGACCAACAG 850 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||||||||| ||||| ||||||||||| | || ||| | || || ||| || Sbjct 851 CGACTGATCTTCGCCGGTAAACAACTCGAAGATGGCCGCACCCTTTCTGACTACAACATC 910 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| ||||| || || ||||| || ||| | ||| Sbjct 911 CAAAAGGAATCGACTCTCCATCTGGTCTTGCGTCTC 946 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || ||| | || || ||||| ||||| | ||||| || || || Sbjct 47 CAGATCTTCGTTAAGACTTTGACTGGCAAAACTATCACTTTGGAGGTCGA--GCCTAGTG 104 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | |||||||| |||||| ||||| || |||||||| || || || || ||||| | Sbjct 105 ACTCGATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGGATACCACCAGACCAAC 164 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||| || |||||||| ||||| ||||||||||| | || || | || |||||| Sbjct 165 AGCGACTGATTTTCGCCGGCAAACAACTCGAAGATGGGCGCACCCTCTCTGACTATAACA 224 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | ||||| || || || |||||||| || | || ||| || Sbjct 225 TTCAAAAGGAGTCCACTCTGCATCTGGTCCTCAGGCTCCGA 265 >seq73473 Length=1996 Score = 143 bits (158), Expect = 6e-29 Identities = 155/204 (76%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || ||||| ||||| || | || || ||||| || || || ||||| ||| ||| Sbjct 1407 CAGATTTTTGTGAAGACGTTGACTGGCAAAACTATTACTCTAGAGGTTGAACCTAGC--- 1463 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||| | |||||||| ||||| |||||| |||||||||| |||||||| || |||||| Sbjct 1464 GACTCGATCGAGAATGTCAAGGCTAAGATTTAGGACAAAGAGGGAATCCCACCAGACCAG 1523 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 |||||| | || |||||||| ||||| |||||||| || | || || | ||||| ||| Sbjct 1524 CAACGATTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGCACCCTCTCTGATTACAAC 1583 Query 178101 GTCCAAAAAGAATCAACACTGCAT 178124 |||| || || || ||||||||| Sbjct 1584 ATCCAGAAGGAGTCTACACTGCAT 1607 >seq36821 Length=4459 Score = 136 bits (150), Expect = 9e-27 Identities = 162/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| | || || || || || || || ||||| || || ||| Sbjct 1343 CAGATCTTTGTCAAAACCTTGACTGGCAAGACTATTACTCTAGAGGTTGA--GCCCAGCG 1400 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || ||||| |||||||| ||||||||||| || ||||| | Sbjct 1401 ACTCGATTGAGAATGTTAAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCAAC 1460 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | |||| ||||||||||| ||||| ||||| ||||| | || || | ||||| ||| Sbjct 1461 AGAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAACA 1520 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 |||||||||| || ||| ||||||| || ||| | ||| Sbjct 1521 TCCAAAAAGAGTCTACATTGCATCTGGTCTTGCGTCTC 1558 >seq8609 Length=11408 Score = 136 bits (150), Expect = 9e-27 Identities = 162/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| | || || || || || || || ||||| || || ||| Sbjct 10226 CAGATCTTTGTCAAAACCTTGACTGGCAAGACTATTACTCTAGAGGTTGA--GCCCAGCG 10283 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || ||||| |||||||| ||||||||||| || ||||| | Sbjct 10284 ACTCGATTGAGAATGTTAAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCAAC 10343 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | |||| ||||||||||| ||||| ||||| ||||| | || || | ||||| ||| Sbjct 10344 AGAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAACA 10403 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 |||||||||| || ||| ||||||| || ||| | ||| Sbjct 10404 TCCAAAAAGAGTCTACATTGCATCTGGTCTTGCGTCTC 10441 >seq36647 Length=4477 Score = 116 bits (128), Expect = 9e-21 Identities = 152/207 (73%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||| ||||| || || || || || || ||||| | |||||||| || || Sbjct 4142 CAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACGTTGGAGGTGGA--GCCGAGTG 4199 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | ||||| || || || |||||||||||| || ||||| || ||||||||||||| Sbjct 4200 ACTCGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCGGACCAGC 4259 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||| || || ||| | |||||||| | || || | || || || Sbjct 4260 AGCGTCTGATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGTACGCTGTCTGACTACAATA 4319 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || ||||| |||| Sbjct 4320 TCCAGAAGGAGTCGACTCTGCA-CTTG 4345 >seq7124 Length=12460 Score = 105 bits (116), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || || || || || || ||||| | ||||||||| ||| Sbjct 7111 CAAATCTTTGTGAAGACACTGACTGGCAAGACCATCACGTTGGAGGTGGAACCGAGTGAC 7170 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || || || |||||||||||| || ||||| || ||||| |||||||| Sbjct 7171 TCTATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCAGACCAGCAG 7230 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || || || | || || | || || || || Sbjct 7231 CGCCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGTCGTACACTCTCGGACTACAATATC 7290 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 7291 CAGAAGGAGTCGACCCTGCA-CTTG 7314 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/208 (71%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || || ||||| || || || || || || || || | ||||||||| ||| Sbjct 7339 CAGATCTTTGTGAAGACGCTGACTGGCAAGACCATAACTTTGGAGGTGGAACCGAGC--- 7395 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||| | |||||||| || || ||||||||||||||| ||||| || ||||| || || Sbjct 7396 GACTCGATCGAGAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGATCAA 7455 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||| || || || ||| | || || || | || || | || || || Sbjct 7456 CAGCGCCTGATCTTTGCTGGTAAGCAGTTGGAGGACGGTCGCACACTCTCAGACTACAAT 7515 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || ||||| |||| Sbjct 7516 ATCCAGAAAGAGTCGACTCTGCA-CTTG 7542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201567472855036