Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq948 145 8e-30 >seq948 Length=1705571 Score = 145 bits (160), Expect = 8e-30 Identities = 503/781 (64%), Gaps = 8/781 (1%) Strand=Plus/Minus Query 16774 GTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTC 16833 ||| ||||| || | | || | ||| || ||||| ||| ||||||||||||| Sbjct 192115 GTATCCCAGCTCTGTAAGTAGCCGATCGGCAACAAACCTTATGTATTGGCACATTAGGCG 192056 Query 16834 GCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGC--TCTATA 16891 || ||||| || |||||| || || | || || || | |||| | || || || Sbjct 192055 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAAT--TCGCATTCAATG 191998 Query 16892 ACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGT 16951 |||||| ||| | ||||| | ||||| ||| | | ||| | | || |||| Sbjct 191997 CTAACCGCCTCCCTCATAATGTCATAAACTCTTTCTGCCGTAGGTTTGTTGACAATATGT 191938 Query 16952 TTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTA 17011 ||||| || || ||||| || ||| || | || || || | |||||| | ||||| Sbjct 191937 TTAAAAATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTG 191878 Query 17012 GAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGAC 17071 || || | || ||||| || || ||||| | |||||| || | || || || Sbjct 191877 CTGAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAATGAA 191818 Query 17072 CCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG 17131 ||||||||||| | || || || | || || || | || || |||||||| | || Sbjct 191817 CCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTATGGAGCC 191758 Query 17132 TCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTT 17191 | | || |||||| | | |||| |||||||| | | || || ||| Sbjct 191757 TTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTC 191698 Query 17192 TCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 | | ||| ||||| || || |||| | | || | || || ||||| || || Sbjct 191697 TGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTTAATGTAGGTATCAATCAGA 191638 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 || |||||||||||| || ||||| || | ||| | || | |||||||| || || Sbjct 191637 AGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAACGA 191578 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC--CGCTAGATTTTCGTTCACGATGC 17369 || || | ||||| ||||| || || |||| | ||||||||| || ||||||| Sbjct 191577 GCCTCGGGAATTTGGACTTC--GTTACAAAAGTTCAAAGTTAGATTTTCATTAACGATGC 191520 Query 17370 CGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAA 17429 | || || || || ||||| ||||| | || ||||||| |||| | ||| Sbjct 191519 CATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCATTAA 191460 Query 17430 GAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAG 17489 | | ||| || | | || || | | ||| ||||| || |||||||| | Sbjct 191459 GGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGGAGG 191400 Query 17490 CCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATC 17549 | || || || || || | | |||||| |||| ||||| ||||| | ||||| ||| Sbjct 191399 CAACAGCTTTCTTGTAAAACTCCCAAATGTCATGATATTGGATGGGCATCACAACGAATC 191340 Query 17550 T 17550 | Sbjct 191339 T 191339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517539408860760