Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq948 185 9e-42 >seq948 Length=1705571 Score = 185 bits (204), Expect = 9e-42 Identities = 513/785 (65%), Gaps = 4/785 (1%) Strand=Plus/Minus Query 16006 CTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACAT 16065 |||| ||| ||||| || |||| || | ||| || ||||| ||| ||||| ||||| Sbjct 192121 CTTATCGTATCCCAGCTCTGTAAGTAGCCGATCGGCAACAAACCTTATGTATTGGCACAT 192062 Query 16066 TAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTC 16125 || | ||||| || || ||||| || || | || | ||| | ||||| ||| Sbjct 192061 TAGGCGACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTC 192002 Query 16126 TATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAG 16185 || |||||| || | || || || ||| | | | | ||| | | | | Sbjct 192001 AATGCTAACCGCCTCCCTCATAATGTCATAAACTCTTTCTGCCGTAGGTTTGTTGACAAT 191942 Query 16186 GTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTC 16245 |||||||| || || || || |||||| || || ||||| || | |||||| | || Sbjct 191941 ATGTTTAAAAATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTC 191882 Query 16246 GTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA 16305 |||| || || | |||||||| || || ||||| | ||| || || | |||||| Sbjct 191881 GTTGCTGAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAA 191822 Query 16306 TGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT 16365 ||| || |||||||| | || ||||||| || || || | || || || ||||| | Sbjct 191821 TGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTATGG 191762 Query 16366 AGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCAT 16425 ||| | |||| |||||| | | |||| |||||||| | | ||| || Sbjct 191761 AGCCTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAG 191702 Query 16426 CGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAAT 16485 ||| | | ||| |||||||| || |||| ||| | || || |||||||| Sbjct 191701 CGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTTAATGTAGGTATCAAT 191642 Query 16486 CAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCA 16545 ||| | | ||||||||| || || ||||| || | ||| | || | || || || || Sbjct 191641 CAGAAGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGCATCCCGTAAAAACA 191582 Query 16546 TCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTC--CGCCAGGTTCTCATTCACG 16603 |||||||| | ||||| ||||| || || |||| | || || ||||| ||| Sbjct 191581 ACGAGCCTCGGGAATTTGGACTTC--GTTACAAAAGTTCAAAGTTAGATTTTCATTAACG 191524 Query 16604 ATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGAT 16663 || || ||||| || |||||||| ||||| | | ||||||| |||| || Sbjct 191523 ATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCA 191464 Query 16664 GTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAG 16723 |||| | |||||| | | || || | | ||| ||||| || ||||||||| Sbjct 191463 TTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAG 191404 Query 16724 CTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACG 16783 || || || || || || | | |||||| |||| ||||| ||||| | || ||| Sbjct 191403 GAGGCAACAGCTTTCTTGTAAAACTCCCAAATGTCATGATATTGGATGGGCATCACAACG 191344 Query 16784 TATCT 16788 |||| Sbjct 191343 AATCT 191339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511408282205240