Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq948 199 4e-46 seq434 122 9e-23 seq907 87.8 2e-12 >seq948 Length=1705571 Score = 199 bits (220), Expect = 4e-46 Identities = 392/575 (68%), Gaps = 6/575 (1%) Strand=Plus/Plus Query 116618 CCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACC 116677 ||||| ||||| | ||||| ||| | ||||| || || | || || || ||||| Sbjct 191354 CCCATCCAATATCATGACATTTGGGAGTTTTACAAGAAAGCTGTTGCCTCCTTTTGGACA 191413 Query 116678 GTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAG 116737 || ||||| || || || | |||||| | || ||||| || | || || ||| Sbjct 191414 GTTGAGGAAGTCGATTTGGCGAAGGACCTCACTGATTGGGAAGGCCTTAATGATGGCGAA 191473 Query 116738 CGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAG 116797 || |||||||| | || |||| ||||| || ||||| || |||||||| || || Sbjct 191474 CGTCATTTCATATCTTATGTTTTGGCTTTTTTTGCAGCCAGTGATGGCATCGTTAATGAA 191533 Query 116798 AATCTGG--TCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACG 116855 ||||| | || | ||| | | || || || | ||||||| || || || |||| Sbjct 191534 AATCTAACTTTGAACTTTTG--TAACGAAGTCCAAATTCCCGAGGCTCGTTGTTTTTACG 191591 Query 116856 GCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGT 116915 | | || ||||| | || ||| | || || |||||||| || || || || || | Sbjct 191592 GGATGCAAGTCGCCGTCGAAAACATCCATTCCGAAATGTACTCTCTTCTGATTGATACCT 191651 Query 116916 ACGTGCGCTCTTCGGAGGAGAAGCTCCGTTT-GTTGAACGCCATCGAGACGATGCCGTGC 116974 || | | | | ||| | || | ||| ||| |||||| | ||||| |||| || Sbjct 191652 ACATTAAGGATCCAGTGGA-ACGCGACTTTTTGTTTAACGCCGTTCAGACGCTGCCATGT 191710 Query 116975 GTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGC 117034 || |||| ||||| ||||| || | ||||| || || |||| | | || | Sbjct 191711 GTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGGATTGCAAATAGGAAGGCTCCATACGCC 191770 Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 ||||| || ||||| ||||| || || || ||||| |||||||| || || || | Sbjct 191771 GAGCGGCTAGTGGCATTCGCTGCTGTTGAAGGCGTTTTCTTTTCTGGTTCATTTGCTTCT 191830 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || |||||||||||||| ||||| |||||||| ||||| || |||||||||||| | ||| Sbjct 191831 ATCTTTTGGCTCAAGAAGCGCGGTCTCATGCCAGGCCTCACCTTCAGCAACGAGTTGATC 191890 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 | |||| || || || || ||||||||| || Sbjct 191891 AGCCGGGATGAAGGCCTCCACACCGACTTTGCATG 191925 >seq434 Length=2816 Score = 122 bits (134), Expect = 9e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || ||||| | || || ||| ||| | Sbjct 2598 ATGCAGATCTTCGTGAAGACTTTGACTGGCAAGACAATCACGCTGGAGGTTGAACCCAGC 2657 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||||| ||||| |||||||| || | |||||| Sbjct 2658 GACACAATTGAGAATGTGAAGGCGAAAATTCAGGACAAGGAGGGCATTCCACCAGACCAG 2717 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| |||||| || ||| |||| || | || ||||| |||||||||| Sbjct 2718 CAACGTTTGATCTTCGCGGGGAAGCAGTTGGAAGATGGCCGTACCCTTTCCGACTACAAC 2777 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || ||||||||| | || ||||| || ||| Sbjct 2778 ATTCAGAAGGAGTCGACTCTGCACCTTGTG 2807 Score = 104 bits (114), Expect = 2e-17 Identities = 154/215 (72%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA----AGC 40745 ||||| || ||||| || || ||||| || || || || || | || || || || Sbjct 310 ATGCAGATCTTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAGT 251 Query 40746 CAC-CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || ||| || | |||| | |||| || |||| |||||||| ||||| || ||| Sbjct 250 GACTCGATAGAG----AACG-TGAAGGCTAAGATTCAAGACAAAGAAGGCATTCCACCGG 196 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || || || | |||||| || ||| |||| |||| || ||||| ||||| Sbjct 195 ATCAGCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCCGACT 136 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||| ||||||||| | || ||||| || ||| Sbjct 135 ACAACATTCAGAAGGAGTCGACTCTGCACCTTGTG 101 >seq907 Length=590410 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||||||||| || || || ||||| || || | || || || | Sbjct 18055 AAAATGCAGATTTTCGTAAAAACCCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCA 17996 Query 40747 ACCGA---CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 | || || || | |||| | || | ||||||| || ||||| || || || | Sbjct 17995 AGTGATTCCATCGAG--AACG-TGAAAGCGAAAATTCAGGATAAAGAAGGTATACCGCCA 17939 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || |||||||| || |||| ||| || || || | || || | ||| ||||| |||| Sbjct 17938 GATCAGCAACGGCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGAC 17879 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || || |||||| | || || || || || Sbjct 17878 TACAATATTCAAAAGGAGTCGACACTTCACCTTGT 17844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213036690320