Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq907 149 9e-31 seq956 105 1e-17 >seq907 Length=590410 Score = 149 bits (164), Expect = 9e-31 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || |||| || || || || ||||||||||| | ||| |||| ||| Sbjct 18053 AATGCAGATTTTCGTAAAAACCCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCAAG 17994 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||| | || || | ||| ||||||||| ||||||||||||||||| || ||||| Sbjct 17993 TGATTCCATCGAGAACGTGAAAGCGAAAATTCAGGATAAAGAAGGTATACCGCCAGATCA 17934 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| ||||||| || || || || |||||||||||| | ||||| || || || || Sbjct 17933 GCAACGGCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGACTACAA 17874 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 ||||||||| || || || | || | ||| || | ||||||| ||||| ||| Sbjct 17873 TATTCAAAAGGAGTCGACACTTCACCTTGTTCTAAGACTACGAGGAGGTATGAAA 17819 >seq956 Length=3269709 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| || || || |||||||| ||||| | ||| | || | | Sbjct 2620661 ATGCAGATTTTTGTAAAAACTCTTACTGGCAAAACCATAACCCTTGAGGTCGAGCCTTCT 2620720 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | ||| ||| |||| || |||||||| || || ||||| ||||| ||||| Sbjct 2620721 GATTCTATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCACCAGATCAG 2620780 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||||||||| || || || || |||||| | || | ||| || || ||| Sbjct 2620781 CAGCGTCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTACAAT 2620840 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||| || || ||||| | || | || | ||| | || |||||| Sbjct 2620841 ATTCAGAAGGAGTCAACCCTTCACCTTGTGCTTCGTCTTCGTGGTGGT 2620888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755446962857600