Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq907 116 3e-21 seq956 111 1e-19 seq434 87.8 2e-12 >seq907 Length=590410 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| |||| ||| | || | ||| | ||| ||||| |||||||| ||||| ||| Sbjct 17824 TACCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGG 17883 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || ||| |||||| | || || |||||| |||| || || |||||||| || | Sbjct 17884 ATAGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGCCGTTGCTGATCTGGCG 17943 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 |||| || || || || |||||| ||| || | |||| || || | ||| | Sbjct 17944 GTATACCTTCTTTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCAA 18003 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | ||||| || || || |||||||| ||||||||||| Sbjct 18004 CCTCAAGTGTTATAGTTTTTCCAGTAAGGGTTTTTACGAAAATCTGCAT 18052 >seq956 Length=3269709 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || ||||| ||||| || | | ||| |||||| Sbjct 2620870 CACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCCTC 2620811 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || ||||| | || |||||||||||||| || || || |||||||||||| Sbjct 2620810 CAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTG 2620751 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | | || | ||||||||| | ||| | ||||| Sbjct 2620750 AATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGGGTTATGGTTTT 2620691 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| || |||||||||||||||||||||||| Sbjct 2620690 GCCAGTAAGAGTTTTTACAAAAATCTGCATG 2620660 >seq434 Length=2816 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || ||||||||||| ||| | || || ||| || Sbjct 2807 CACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTC 2748 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || ||| |||| | ||| ||||| || || || |||||||||||||| Sbjct 2747 CAACTGCTTCCCCGCGAAGATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTG 2688 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| || || | || | ||||| || || ||||| | || | || || Sbjct 2687 AATTTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCAACCTCCAGCGTGATTGTCTT 2628 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 118741 ||| |||| ||| || || || |||||||| || Sbjct 2627 GCCAGTCAAAGTCTTCACGAAGATCTGCATCGC 2595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433825340046244