Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq948 161 9e-35 >seq948 Length=1705571 Score = 161 bits (178), Expect = 9e-35 Identities = 493/757 (65%), Gaps = 10/757 (1%) Strand=Plus/Minus Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 |||||| |||||| || | || | ||| || ||||| ||| || || |||| Sbjct 192120 TTATCGTATCCCAGCTCTGTAAGTAGCCGATCGGCAACAAACCTTATGTATTGGCACATT 192061 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 | ||| ||||| || || | || ||||| | ||| ||||| | ||| | ||| Sbjct 192060 AGGCGACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCA 192001 Query 16160 ATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT--TAATA 16217 || ||||||| || | || || || ||| || | | || ||| || | | | Sbjct 192000 ATGCTAACCGCCTCCCTCATAATGTCATAAACT---CTTTCTGCCGTAGGTTTGTTGACA 191944 Query 16218 AG-TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 | |||||||| || | || ||||| || || | ||||| |||| || || ||| Sbjct 191943 ATATGTTTAAAAATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAAC 191884 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 ||||| || || || |||||||| || || || || || | |||||| |||| ||| Sbjct 191883 TCGTTGCTGAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCA 191824 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 ||||||||||||||||| | |||||||| || || ||||| || | ||||| |||| Sbjct 191823 AATGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTAT 191764 Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456 | || || || | ||||| | |||||||| ||||| | |||||| | Sbjct 191763 GGAGCCTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGC 191704 Query 16457 ATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCT 16516 | ||| | || ||||| ||| | | ||| ||| ||| || ||||| Sbjct 191703 AGCGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTTAATGTAGGTATCA 191644 Query 16517 ATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAG 16576 || || | | |||||||| ||||| || || || | || | || | || ||||| Sbjct 191643 ATCAGAAGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGCATCCCGTAAAAA 191584 Query 16577 CATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACT 16636 || | ||| |||| ||||| ||||| |||| | | || ||||| ||||| Sbjct 191583 CAACGAGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGATTTTCATTAACG 191524 Query 16637 ATTCCATCGCTAGCTGCAAAAAACGC--AAGTATGTGTTTAATAAAAtttttttCGTTAT 16694 || ||||| || ||||||||||| || || || | | || |||| |||| || Sbjct 191523 ATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGAT--ATGAAATGACGTTCGCCAT 191466 Query 16695 CTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAA 16754 | ||| | ||| |||| | || || | |||||||| || || || ||||||| Sbjct 191465 CATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAA 191406 Query 16755 AAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 | || |||||||| || || || | | ||| ||||| Sbjct 191405 AGGAGGCAACAGCTTTCTTGTAAAACTCCCAAATGTC 191369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462506467200200