Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq953 217 1e-51 seq948 212 6e-50 seq434 105 6e-18 seq907 84.2 2e-11 >seq953 Length=2188470 Score = 217 bits (240), Expect = 1e-51 Identities = 440/647 (68%), Gaps = 12/647 (2%) Strand=Plus/Minus Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 |||||| |||||||||| ||| | || |||||||| | || || |||| || || Sbjct 251983 CCTTCTAACTCGTACTTTGTGTAGAGCGTTTCAAATTCCTCCCCCCAAAAGTCAGCAAGA 251924 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTT---TCAACGCGTCTC 23353 ||||| ||| || ||| | |||| || | || | ||||| || || Sbjct 251923 CCGGGGCATTCGTGGGGGTCCATAAAGGTCCA---TGGGCCACCTGCTTCAACACGCTTC 251867 Query 23354 ATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTG 23413 || || |||||||| ||||| || || ||| || || || ||||| | ||||| Sbjct 251866 ATGAATAGATCCGGAATCCAAAGTGCAAGGAAGAGATCTCGCGCGCGAGCTTCCTCGGCA 251807 Query 23414 CCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAA 23473 || |||||||| || |||| ||| | || ||| |||| ||||||||| ||||| ||| Sbjct 251806 CCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGTTCGAGATAA 251747 Query 23474 ACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTG 23533 | |||||| || || |||| ||||||||| |||||||| || || || || || ||||| Sbjct 251746 ATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACCGAGCAGTACTGTTG 251687 Query 23534 TACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCC-GCCACACTCGA 23592 | || | |||||||| || |||||||||||| |||| || ||| || | | Sbjct 251686 AAGACCCGAAGCATCGGTACAAGACCGTTGGACTCGCC-ATTAGTCCCAGCGATGAAAGT 251628 Query 23593 ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652 || || || | ||||| | || ||| || || || | ||| || || | Sbjct 251627 GCCCTTACTCCGGATACAATGAACATTGAGACCGATTCCACCAGCACTTTTTGAGATAAG 251568 Query 23653 CGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAA 23712 || |||||||| || ||||| || |||||||| || ||||| ||||| ||| | ||| Sbjct 251567 TGCACATTGTTTGAGCGTGTCATATATGCCCTCAATACTGTCATCTTTCATCGTAAGCAA 251508 Query 23713 GAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTG 23772 || || ||||| || | | ||||| | || || || || || || || Sbjct 251507 AAAGCAGCTGGACATCTGAGGAATAGGCGTCCCAGCATTAAAAAGAGTGGGTGAAGCATG 251448 Query 23773 CGTAAAGTATCCATTC--GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCT 23830 | || | | ||| ||||| ||||||||||| || || || ||||||| ||||| Sbjct 251447 AATCAACCA--CTTTCCGGACATGAGATTGTACGTCTCAATAGCAGCATCAAGATCCTCA 251390 Query 23831 CCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC 23877 || || |||||||| | ||||||||| | ||| || || || ||||| Sbjct 251389 CCATGGATACCGATAGAGACGCGCATAAACATATACTGGGGCCTCTC 251343 >seq948 Length=1705571 Score = 212 bits (234), Expect = 6e-50 Identities = 479/713 (67%), Gaps = 18/713 (3%) Strand=Plus/Plus Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587 ||||| || ||||| || || | || || |||||| ||||||||| | | ||||| Sbjct 191330 AATCCTCGAAGATTCGTTGTGATGCCCATCCAATATCATGACATTTGGGAGTTTTACAAG 191389 Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGAT 57647 || || | || || |||||||| || || ||||| || || | ||||| || | ||| Sbjct 191390 AAAGCTGTTGCCTCCTTTTGGACAGTTGAGGAAGTCGATTTGGCGAAGGACCTCACTGAT 191449 Query 57648 TGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCC 57707 ||||| ||| || || || | |||| || | || ||||| ||||| || Sbjct 191450 TGGGAAGGCCTTAATGATGGCGAACGTCATTTCATATCTTATGTTTTGGCTTTTTTTGCA 191509 Query 57708 GCATCCGATGGTATTGTTAACGAGAATTTGG--TCGAAAGATTTTCACAAGAAGTGCAAG 57765 || ||||| || ||||| || ||| | | ||| || | || ||||| ||| Sbjct 191510 GCCAGTGATGGCATCGTTAATGAAAATCTAACTTTGAACTTTTGTAAC--GAAGTCCAAA 191567 Query 57766 TGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAA 57825 | | ||||| | || |||||||| | ||||| ||| | |||||| | ||||| |||| Sbjct 191568 TTCCCGAGGCTCGTTGTTTTTACGGGATGCAAGTCGCCGTCGAAAACATCCATTCCGAAA 191627 Query 57826 TGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACT----G 57881 |||| || || || || ||||| ||| | ||||| | | | | |||| |||| | Sbjct 191628 TGTACTCTCTTCTGATTGATACCTACATTAAGGAT--CCA-GTGGAACGC-GACTTTTTG 191683 Query 57882 TTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGG 57941 || ||||| | | || |||| | || ||||| || || ||| | | | ||| Sbjct 191684 TTTAACGCCGTTCAGACGCTGCCATGTGTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGG 191743 Query 57942 AT---AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAA 57998 || ||| || | ||| | | ||||||| ||||| | || ||||| || || ||| Sbjct 191744 ATTGCAAATAGG---AAGGCTCCATACGCCGAGCGGCTAGTGGCATTCGCTGCTGTTGAA 191800 Query 57999 GGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATG 58058 || | |||||||| || ||||| | || |||||| | ||||| ||||| || ||| Sbjct 191801 GGCGTTTTCTTTTCTGGTTCATTTGCTTCTATCTTTTGGCTCAAGAAGCGCGGTCTCATG 191860 Query 58059 CCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTT 58118 || ||||| || || |||||||||||||| || || || || ||||| || || ||| Sbjct 191861 CCAGGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACACCGACTTT 191920 Query 58119 GCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATT 58178 || ||||| || | || |||||||| ||||| ||| || | | | |||||| Sbjct 191921 GCATGCCTTATTTTTAAACATATTGTCAACAAACCTACGGCAGAAAGAGTTTATGACATT 191980 Query 58179 ATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGT 58231 || | |||||||| || ||| || ||| |||| || || |||| || Sbjct 191981 ATGAGGGAGGCGGTTAGCATTGAATGCGAATTTCTCACAGACGCATTACCTGT 192033 >seq434 Length=2816 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| ||||| || ||||| | || |||||||| | Sbjct 2598 ATGCAGATCTTCGTGAAGACTTTGACTGGCAAGACAATCACGCTGGAGGTTGAACCCAGC 2657 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || ||| ||||||||| ||| | || || |||||| Sbjct 2658 GACACAATTGAGAATGTGAAGGCGAAAATTCAGGACAAGGAGGGCATTCCACCAGACCAG 2717 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || ||||| || || ||||||||||| || | ||| || ||| Sbjct 2718 CAACGTTTGATCTTCGCGGGGAAGCAGTTGGAAGATGGCCGTACCCTTTCCGACTACAAC 2777 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || |||||||| || || || ||| Sbjct 2778 ATTCAGAAGGAGTCGACTCTGCACCTTGTGCTT 2810 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 ||||| |||||| | || || || ||||||||||| |||||||| || || ||||||||| Sbjct 217 GACAAAGAAGGCATTCCACCGGATCAGCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAA 158 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || | ||| || |||||||| || || |||||||| || || || ||| Sbjct 157 GACGGCCGTACCCTTTCCGACTACAACATTCAGAAGGAGTCGACTCTGCACCTTGTGCTT 98 >seq907 Length=590410 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/234 (68%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||||||||| || || || || ||||| || || | || ||||| || Sbjct 18055 AAAATGCAGATTTTCGTAAAAACCCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCA 17996 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | || ||| || ||| ||| || ||||| | ||||| || Sbjct 17995 AGTGATTCCATCGAGAACGTGAAAGCGAAAATTCAGGATAAAGAAGGTATACCGCCAGAT 17936 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGATT 31367 ||||| || || || |||||||| || || || || || | | |||| ||| | Sbjct 17935 CAGCAACGGCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTAT--CCGACT 17878 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | || |||||||| || ||||| ||||| || || || ||||| | || |||| Sbjct 17877 ACAATATTCAAAAGGAGTCGACACTTCACCTTGTTCTAAGACTACGAGGAGGTA 17824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761067519440