Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq948 293 3e-74 seq953 178 2e-39 >seq948 Length=1705571 Score = 293 bits (324), Expect = 3e-74 Identities = 519/752 (69%), Gaps = 15/752 (2%) Strand=Plus/Minus Query 33452 ACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGA 33511 ||||||||| || || || || || || | || | || |||||||| ||||||| Sbjct 192055 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 191996 Query 33512 TACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTT 33571 ||||| | | ||||| ||| ||||| | | ||| | | | |||||| Sbjct 191995 AACCGCCTCCCTCATAATGTCATAAACTCTTTCTGCCGTAGGTTTGTTGACAATATGTTT 191936 Query 33572 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGA 33631 ||| || | ||||| || ||| ||| || || || || | || || || ||||| Sbjct 191935 AAAAATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTGCT 191876 Query 33632 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33691 || ||||| || ||||| || || ||||| || |||||||| || ||||| ||||| || Sbjct 191875 GAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAATGAACC 191816 Query 33692 GGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 33751 |||||||| | ||||| || ||||| || || | || | ||| | || || || Sbjct 191815 AGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTAT--GGAGCC 191758 Query 33752 GTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806 || | | |||||| | ||||||||||||| ||||| ||||| |||| ||| Sbjct 191757 TTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTC 191698 Query 33807 TCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCA 33864 | | ||| ||||| | | ||| ||| ||| ||| |||| || ||||| |||| Sbjct 191697 TGAACGGCGTTAAACAAAAAGTCGCGTTCC--ACTGGATCCTTAATGTAGGTATCAATCA 191640 Query 33865 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33924 |||| |||||||| ||||| |||||||| | ||| | || | ||||| ||||| | Sbjct 191639 GAAGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAAC 191580 Query 33925 TAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTAT 33982 |||||||| ||| || ||||| ||||||| |||| | || ||||||||| || || Sbjct 191579 GAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGATTTTCATTAACGAT 191522 Query 33983 TCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 34042 |||||||||||||||||||| ||||| |||| ||| |||| |||| | | Sbjct 191521 GCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCATT 191462 Query 34043 TAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 34102 || | ||||||| ||| || || | | ||| ||||| || ||||||||||| || Sbjct 191461 AAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGGA 191402 Query 34103 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || | || || || || | | ||| ||||||||||||||||| || | | ||| || Sbjct 191401 GGCAACAGCTTTCTTGTAAAACTCCCAAATGTCATGATATTGGATGGGCATCACAACGAA 191342 Query 34163 TCTATTTGGATTTGGTGCAAGGATAGGTTCCA 34194 ||| ||||| || |||| | |||||||| Sbjct 191341 TCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 191310 >seq953 Length=2188470 Score = 178 bits (196), Expect = 2e-39 Identities = 374/551 (68%), Gaps = 9/551 (2%) Strand=Plus/Minus Query 63263 CTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTC 63321 ||||| | || ||||| || ||||| ||||||||||| || | || ||||||| | | Sbjct 251880 CTTCAACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAGAGATCTCGCGCGC 251821 Query 63322 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63381 | ||||||| || || ||||| | || | ||| || | ||| | ||||| Sbjct 251820 GAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCC 251761 Query 63382 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 63441 ||||||| | || ||||| | | || || || || || || |||||||| | || | Sbjct 251760 ACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACC 251701 Query 63442 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTAC 63501 ||| || | || | || | | ||| || | || |||||| || ||||| || | Sbjct 251700 GAGCAGTACTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCGCCATTAGTCC 251641 Query 63502 CGGAGAT-ATAGCCTCCACTGGCAC-GAATATTACTAA--TTGATAGACCTATTCCCCCT 63557 | | ||| | || | | || | | | ||| | || |||| |||| ||||| || Sbjct 251640 CAGCGATGAAAG--TGCCCTTACTCCGGATACAATGAACATTGA--GACCGATTCCACCA 251585 Query 63558 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCA 63617 || |||| ||||| | ||| ||| |||| | ||||||||| ||||| || || || ||| Sbjct 251584 GCACTTTTTGAGATAAGTGCACATTGTTTGAGCGTGTCATATATGCCCTCAATACTGTCA 251525 Query 63618 TCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAAT 63677 || |||| |||| | ||| ||||| ||||| || || || || || |||||||| Sbjct 251524 TCTTTCATCGTAAGCAAAAAGCAGCTGGACATCTGAGGAATAGGCGTCCCAGCATTAAAA 251465 Query 63678 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 63737 | || || ||||| || | ||||| ||| | || | |||||||||||||||||||| Sbjct 251464 AGAGTGGGTGAAGCATGAATCAACCACTTTCCGGACATGAGATTGTACGTCTCAATAGCA 251405 Query 63738 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63797 | || | |||| ||| || || | | ||| ||||| ||||| | ||| || || Sbjct 251404 GCATCAAGATCCTCACCATGGATACCGATAGAGACGCGCATAAACATATACTGGGGCCTC 251345 Query 63798 TCAACAATTTT 63808 || |||||| Sbjct 251344 TCCCAAATTTT 251334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810065806960