Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq953 141 9e-29 >seq953 Length=2188470 Score = 141 bits (156), Expect = 9e-29 Identities = 314/469 (67%), Gaps = 4/469 (1%) Strand=Plus/Minus Query 38128 TGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATA 38187 ||||| ||||| | |||||| | | || || |||| |||| || ||||||| || | Sbjct 251764 TGCCACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACA 251705 Query 38188 TATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTT 38247 || | | | || | || | | | | ||| ||||| | ||| || || | ||| || Sbjct 251704 TACCGAGCAGTACTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCGCCATTA 251645 Query 38248 ATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTA--TCGACAATCCTATTCCAC 38305 | || | || |||| |||||| || ||| | | | || | || ||||||| Sbjct 251644 GTCCCAGCGATGAAAGTGCCCTTACTCCGGATACAATGAACATTGAGA--CCGATTCCAC 251587 Query 38306 CTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGT 38365 | ||| |||||| || | || |||||||| | ||| ||| |||| || || ||||||| Sbjct 251586 CAGCACTTTTTGAGATAAGTGCACATTGTTTGAGCGTGTCATATATGCCCTCAATACTGT 251527 Query 38366 CATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAA 38425 |||| || || | || | ||| || || ||||| ||||| | || || || || |||| Sbjct 251526 CATCTTTCATCGTAAGCAAAAAGCAGCTGGACATCTGAGGAATAGGCGTCCCAGCATTAA 251467 Query 38426 ATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTA 38485 | | || || || ||||| || ||||| ||| | |||| ||| || || || || Sbjct 251466 AAAGAGTGGGTGAAGCATGAATCAACCACTTTCCGGACATGAGATTGTACGTCTCAATAG 251407 Query 38486 CATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTC 38545 || |||| | ||| | || || ||||| | ||| || | ||| | ||||| || || | Sbjct 251406 CAGCATCAAGATCCTCACCATGGATACCGATAGAGACGCGCATAAACATATACTGGGGCC 251347 Query 38546 TTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGT 38594 | || ||||| || | ||| ||||||||||| ||||| || Sbjct 251346 TCTCCCAAATTTTTCCATCCCTACGAAGAAGATACGATTTCTCTAACGT 251298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468519195272080