Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq948 289 4e-73 seq953 176 6e-39 >seq948 Length=1705571 Score = 289 bits (320), Expect = 4e-73 Identities = 504/724 (70%), Gaps = 17/724 (2%) Strand=Plus/Minus Query 36028 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 36087 ||||||||| || ||||| || || || | || | || |||||||| |||||| Sbjct 192055 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 191996 Query 36088 GACCGCGTCTGTTATAATAG-ATATTACTGTTTCTTCACTCGGTGGAT--ACAATAAATG 36144 ||||| || | ||||| ||| ||| ||||| | | ||| | |||||| || Sbjct 191995 AACCGCCTCCCTCATAATGTCATAA-ACTCTTTCTGCCGTAGGTTTGTTGACAATA--TG 191939 Query 36145 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 36204 |||||| || | ||||| || ||| ||| || || || || | || || || ||||| Sbjct 191938 TTTAAAAATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTT 191879 Query 36205 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 36264 | || ||||| || ||||| || || ||||| || |||||||| || || |||||||| Sbjct 191878 GCTGAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAATGA 191819 Query 36265 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 36324 ||||||||||||| ||||| || || || || || | || | ||| | || || Sbjct 191818 ACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTATGGAGC 191759 Query 36325 ACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 36381 | || | |||||| | ||||||||||||| ||||| ||||| |||| || Sbjct 191758 CTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGT 191699 Query 36382 CTCTATAGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCAATC 36439 || | || ||||| | | ||| ||| ||| ||| |||| || ||||||||| Sbjct 191698 CTGAACGGCGTTAAACAAAAAGTCGCGTTCC--ACTGGATCCTTAATGTAGGTATCAATC 191641 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499 | |||| |||||||| ||||| |||||||| | ||| | ||| | ||||| ||||| Sbjct 191640 AGAAGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAA 191581 Query 36500 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTA 36557 | |||||||| ||| || ||||| ||||||| |||| | || ||||||||| || | Sbjct 191580 CGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGATTTTCATTAACGA 191523 Query 36558 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTG 36617 | || ||||||||||||||||| ||||| |||| ||| |||| |||| Sbjct 191522 TGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCAT 191463 Query 36618 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 36677 | || | ||||||| ||| || || | | ||| ||||| || ||||||||||| | Sbjct 191462 TAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGG 191403 Query 36678 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 36737 | || | || || || || | | ||| |||||||||||||| || || | | ||| | Sbjct 191402 AGGCAACAGCTTTCTTGTAAAACTCCCAAATGTCATGATATTGGATGGGCATCACAACGA 191343 Query 36738 ATCT 36741 |||| Sbjct 191342 ATCT 191339 >seq953 Length=2188470 Score = 176 bits (194), Expect = 6e-39 Identities = 367/541 (68%), Gaps = 7/541 (1%) Strand=Plus/Minus Query 66056 CTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTC 66114 ||||| | || ||||| || ||||| ||||||||||| || | || | ||||| | | Sbjct 251880 CTTCAACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAGAGATCTCGCGCGC 251821 Query 66115 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCC 66174 | ||||||| || || ||||| | || | ||| || | ||| ||||| Sbjct 251820 GAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCC 251761 Query 66175 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 66234 ||||||| | || ||||| | | || || || || || || |||||||| | || | Sbjct 251760 ACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACC 251701 Query 66235 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCC 66294 ||| || | || | || | | ||| || | || ||| ||||| ||||| |||| Sbjct 251700 GAGCAGTACTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCGCCATTAGTCC 251641 Query 66295 CGGAGATATAGCTTCCACTTGCAC-GAATATTACTAA--TTGATAGACCTATTCCCCCTG 66351 | | ||| | | || ||| | | | ||| | || |||| |||| ||||| || | Sbjct 251640 CAGCGATGAAAGTGCC-CTTACTCCGGATACAATGAACATTGA--GACCGATTCCACCAG 251584 Query 66352 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 66411 | |||| ||||| | ||| ||| |||| | ||| ||||| |||||||| ||||| |||| Sbjct 251583 CACTTTTTGAGATAAGTGCACATTGTTTGAGCGTGTCATATATGCCCTCAATACTGTCAT 251524 Query 66412 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 66471 | |||| |||| | ||| ||||| ||||| || || | || || |||||||| | Sbjct 251523 CTTTCATCGTAAGCAAAAAGCAGCTGGACATCTGAGGAATAGGCGTCCCAGCATTAAAAA 251464 Query 66472 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 66531 || || ||||| || | ||||| ||| | || | |||||||||||||||||||| | Sbjct 251463 GAGTGGGTGAAGCATGAATCAACCACTTTCCGGACATGAGATTGTACGTCTCAATAGCAG 251404 Query 66532 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 66591 || | |||| ||| || || | | ||| ||||| ||||| | ||| || || | Sbjct 251403 CATCAAGATCCTCACCATGGATACCGATAGAGACGCGCATAAACATATACTGGGGCCTCT 251344 Query 66592 C 66592 | Sbjct 251343 C 251343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658164926607880