Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq907 89.7 5e-13 >seq907 Length=590410 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||||| | | ||| | ||||| || ||||| |||||||| || || ||| Sbjct 17826 CCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGAT 17885 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | || || | || |||||||| |||| || ||||||||||| || ||| Sbjct 17886 AGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGCCGTTGCTGATCTGGCGGT 17945 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| | ||| | | || | | || | ||||| || Sbjct 17946 ATACCTTCTTTATC-CTGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCAAC 18004 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | || || || || | ||||||||||| || ||||| Sbjct 18005 CTCAAGTGTTATAGTTTTTCCAGTAAGGGTTTTTACGAAAATCTGCAT 18052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496058065834400