Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01-
28] 957 sequences; 110,837,706 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq948 309 4e-79
seq953 183 4e-41
>seq948
Length=1705571
Score = 309 bits (342), Expect = 4e-79
Identities = 526/754 (70%), Gaps = 19/754 (3%)
Strand=Plus/Minus
Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 49889
||||||||| || ||||| || || || | || | || |||||||| |||||||
Sbjct 192055 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 191996
Query 49890 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTG-GATG-CAATAAATGT 49947
||||| || | ||||| ||| ||||| | | ||| | || ||||| |||
Sbjct 191995 AACCGCCTCCCTCATAATGTCATAAACTCTTTCTGCCGTAGGTTTGTTGACAATA--TGT 191938
Query 49948 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 50007
||||| || | ||||| || ||| ||| || || || || | || || | ||||||
Sbjct 191937 TTAAAAATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTG 191878
Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC 50067
|| ||||| || ||||| || || ||||| || |||||||| || || ||||||||
Sbjct 191877 CTGAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAATGAA 191818
Query 50068 CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG 50127
||||||||||| | ||||| || || || || || || || | ||| | || ||| |
Sbjct 191817 CCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTA--TGGAG 191760
Query 50128 CTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 50182
| || | | |||||| | ||||||||||||| ||||| ||||| |||| ||
Sbjct 191759 CCTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCG 191700
Query 50183 TTTCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGAT 50240
| | | ||| ||||| | | ||| ||| ||| ||| |||| || ||||| ||
Sbjct 191699 TCTGAACGGCGTTAAACAAAAAGTCGCGTTCC--ACTGGATCCTTAATGTAGGTATCAAT 191642
Query 50241 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 50300
|| |||| |||||||| ||||| |||||||| | ||| | || | ||||| |||||
Sbjct 191641 CAGAAGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGCATCCCGTAAAAACA 191582
Query 50301 TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACT 50358
| |||||||| ||| || ||||| ||||||| ||||| | || ||||||||| ||
Sbjct 191581 ACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGATTTTCATTAACG 191524
Query 50359 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGT 50418
|| || ||||||||||||||||| ||||| |||| ||| ||||| ||||
Sbjct 191523 ATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCA 191464
Query 50419 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 50478
| || | ||||||| ||| || || | | ||| ||||| || |||||||||||
Sbjct 191463 TTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAG 191404
Query 50479 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACA 50538
|| || | || || || || | | ||| ||||||||||||||||| || | | |||
Sbjct 191403 GAGGCAACAGCTTTCTTGTAAAACTCCCAAATGTCATGATATTGGATGGGCATCACAACG 191344
Query 50539 AATCTATTTGGATTTGGTGCAAGGATCGGTTCCA 50572
||||| ||||| || |||| | |||||||
Sbjct 191343 AATCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 191310
>seq953
Length=2188470
Score = 183 bits (202), Expect = 4e-41
Identities = 410/614 (67%), Gaps = 4/614 (1%)
Strand=Plus/Minus
Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919
||| || || || ||||||| || | | || || ||||||| || ||| || |
Sbjct 251954 TTCAAATTCCTCCCCCCAAAAGTCAGCAAGACCGGGGCATTCGTGGGGGTCCATAAAGGT 251895
Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979
||| ||| | | | || || ||||| || ||||| ||||||||||| || | ||
Sbjct 251894 CCATGGGCCACCTGCTTCAACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAA 251835
Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039
||||||| | | | |||||| || || ||||| | || | ||| ||
Sbjct 251834 GAGATCTCGCGCGCGAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAG 251775
Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099
| ||| | |||||||||||| | || ||||| | | || ||||| || || || ||
Sbjct 251774 CACATCCGGATGCCACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCC 251715
Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159
|||||| | || | ||| || | || | || | | ||| || | || ||| |||||
Sbjct 251714 CTGATCAACATACCGAGCAGTACTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGA 251655
Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGA 80217
||||| ||||| | ||| | | || | || ||| | | |||| |||
Sbjct 251654 CTCGCCATTAGTCCCAGCGATGAAAGTGCCCTTACTCCGGATACAATGAACATTG--AGA 251597
Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277
|| ||||| || || |||| ||||| | ||| ||| |||| | ||| ||||| ||||||
Sbjct 251596 CCGATTCCACCAGCACTTTTTGAGATAAGTGCACATTGTTTGAGCGTGTCATATATGCCC 251537
Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 80337
|| || || ||||| |||| |||| | ||| ||||| ||||| || || | ||
Sbjct 251536 TCAATACTGTCATCTTTCATCGTAAGCAAAAAGCAGCTGGACATCTGAGGAATAGGCGTC 251477
Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 80397
|| |||||||| | || || ||||| || | ||||| ||| | |||| |||||||||
Sbjct 251476 CCAGCATTAAAAAGAGTGGGTGAAGCATGAATCAACCACTTTCCGGACATGAGATTGTAC 251417
Query 80398 GTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATG 80457
||||||||||| | || | |||| ||| || || | | ||| ||||| |||||
Sbjct 251416 GTCTCAATAGCAGCATCAAGATCCTCACCATGGATACCGATAGAGACGCGCATAAACATA 251357
Query 80458 TGCTGAGGTCTTTC 80471
| ||| || || ||
Sbjct 251356 TACTGGGGCCTCTC 251343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718260207709480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |