Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq948 309 4e-79 seq953 183 4e-41 >seq948 Length=1705571 Score = 309 bits (342), Expect = 4e-79 Identities = 526/754 (70%), Gaps = 19/754 (3%) Strand=Plus/Minus Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 49889 ||||||||| || ||||| || || || | || | || |||||||| ||||||| Sbjct 192055 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 191996 Query 49890 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTG-GATG-CAATAAATGT 49947 ||||| || | ||||| ||| ||||| | | ||| | || ||||| ||| Sbjct 191995 AACCGCCTCCCTCATAATGTCATAAACTCTTTCTGCCGTAGGTTTGTTGACAATA--TGT 191938 Query 49948 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 50007 ||||| || | ||||| || ||| ||| || || || || | || || | |||||| Sbjct 191937 TTAAAAATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTG 191878 Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC 50067 || ||||| || ||||| || || ||||| || |||||||| || || |||||||| Sbjct 191877 CTGAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAATGAA 191818 Query 50068 CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG 50127 ||||||||||| | ||||| || || || || || || || | ||| | || ||| | Sbjct 191817 CCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTA--TGGAG 191760 Query 50128 CTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 50182 | || | | |||||| | ||||||||||||| ||||| ||||| |||| || Sbjct 191759 CCTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCG 191700 Query 50183 TTTCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGAT 50240 | | | ||| ||||| | | ||| ||| ||| ||| |||| || ||||| || Sbjct 191699 TCTGAACGGCGTTAAACAAAAAGTCGCGTTCC--ACTGGATCCTTAATGTAGGTATCAAT 191642 Query 50241 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 50300 || |||| |||||||| ||||| |||||||| | ||| | || | ||||| ||||| Sbjct 191641 CAGAAGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGCATCCCGTAAAAACA 191582 Query 50301 TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACT 50358 | |||||||| ||| || ||||| ||||||| ||||| | || ||||||||| || Sbjct 191581 ACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGATTTTCATTAACG 191524 Query 50359 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGT 50418 || || ||||||||||||||||| ||||| |||| ||| ||||| |||| Sbjct 191523 ATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCA 191464 Query 50419 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 50478 | || | ||||||| ||| || || | | ||| ||||| || ||||||||||| Sbjct 191463 TTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAG 191404 Query 50479 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACA 50538 || || | || || || || | | ||| ||||||||||||||||| || | | ||| Sbjct 191403 GAGGCAACAGCTTTCTTGTAAAACTCCCAAATGTCATGATATTGGATGGGCATCACAACG 191344 Query 50539 AATCTATTTGGATTTGGTGCAAGGATCGGTTCCA 50572 ||||| ||||| || |||| | ||||||| Sbjct 191343 AATCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 191310 >seq953 Length=2188470 Score = 183 bits (202), Expect = 4e-41 Identities = 410/614 (67%), Gaps = 4/614 (1%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| || || || ||||||| || | | || || ||||||| || ||| || | Sbjct 251954 TTCAAATTCCTCCCCCCAAAAGTCAGCAAGACCGGGGCATTCGTGGGGGTCCATAAAGGT 251895 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 ||| ||| | | | || || ||||| || ||||| ||||||||||| || | || Sbjct 251894 CCATGGGCCACCTGCTTCAACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAA 251835 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 ||||||| | | | |||||| || || ||||| | || | ||| || Sbjct 251834 GAGATCTCGCGCGCGAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAG 251775 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 | ||| | |||||||||||| | || ||||| | | || ||||| || || || || Sbjct 251774 CACATCCGGATGCCACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCC 251715 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 |||||| | || | ||| || | || | || | | ||| || | || ||| ||||| Sbjct 251714 CTGATCAACATACCGAGCAGTACTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGA 251655 Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGA 80217 ||||| ||||| | ||| | | || | || ||| | | |||| ||| Sbjct 251654 CTCGCCATTAGTCCCAGCGATGAAAGTGCCCTTACTCCGGATACAATGAACATTG--AGA 251597 Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || ||||| || || |||| ||||| | ||| ||| |||| | ||| ||||| |||||| Sbjct 251596 CCGATTCCACCAGCACTTTTTGAGATAAGTGCACATTGTTTGAGCGTGTCATATATGCCC 251537 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 80337 || || || ||||| |||| |||| | ||| ||||| ||||| || || | || Sbjct 251536 TCAATACTGTCATCTTTCATCGTAAGCAAAAAGCAGCTGGACATCTGAGGAATAGGCGTC 251477 Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 80397 || |||||||| | || || ||||| || | ||||| ||| | |||| ||||||||| Sbjct 251476 CCAGCATTAAAAAGAGTGGGTGAAGCATGAATCAACCACTTTCCGGACATGAGATTGTAC 251417 Query 80398 GTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATG 80457 ||||||||||| | || | |||| ||| || || | | ||| ||||| ||||| Sbjct 251416 GTCTCAATAGCAGCATCAAGATCCTCACCATGGATACCGATAGAGACGCGCATAAACATA 251357 Query 80458 TGCTGAGGTCTTTC 80471 | ||| || || || Sbjct 251356 TACTGGGGCCTCTC 251343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718260207709480