Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq948 154 1e-32 >seq948 Length=1705571 Score = 154 bits (170), Expect = 1e-32 Identities = 519/800 (65%), Gaps = 15/800 (2%) Strand=Plus/Minus Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733 || ||||| | || || ||| |||| | ||| |||| |||| || ||||| || Sbjct 192123 ACCTTATCGTATCCCAGCTCTGTAAGTAGCCGATCGGCAACAAACCTTATGTATTGGCAC 192064 Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793 |||| ||||||||| || || || || ||||| | | | || | |||||| | Sbjct 192063 ATTAGGCGACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCAT 192004 Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTA-GAAGGAGGATATTT 13852 || || || ||||| | ||||| || |||| ||| || | | ||| | || Sbjct 192003 TCAATGCTAACCGCCTCCCTCATAAT----GTCATAAACTCTTTCTGCCGTAGGTTTGTT 191948 Query 13853 TAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAAT 13909 | | ||||||||||| | || ||||| || || ||||| ||||| | || || Sbjct 191947 GACAATATGTTTAAAAATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGAT 191888 Query 13910 AAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGC 13969 | ||||| || || | |||||||| | || || || || | |||||| || | Sbjct 191887 CAACTCGTTGCTGAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGA 191828 Query 13970 AGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029 ||||||||| || |||||||| | || ||||| ||||| || || | || || || | Sbjct 191827 AGCAAATGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGC 191768 Query 14030 AAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAA 14089 | | || || | || | ||||| | |||||| || | ||| || || | | Sbjct 191767 GTATGGAGCCTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACA 191708 Query 14090 ATCCATTGTTTCAATAGCATTAAATAAATATTCC--TTCTCTTTAGTACTTGAAATGTAT 14147 || || | || || ||||| ||| | || ||| | | ||| |||||| Sbjct 191707 TGGCAGCGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTT--AATGTAG 191650 Query 14148 GTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACC 14206 |||||||| || ||| | |||||||| || || |||||||| | || | || | || Sbjct 191649 GTATCAATCAG-AAGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGCATCCC 191591 Query 14207 ATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTC 14266 ||||| || | ||| || | ||| ||||| |||| | | | |||||| Sbjct 191590 GTAAAAACAACGAGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGATTTTC 191531 Query 14267 ATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTC 14326 |||||| || |||||||| ||||||||||| ||||| | | || || | | || Sbjct 191530 ATTAACGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTC 191471 Query 14327 TTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGT 14386 ||| || || || |||||| | | ||||| | | ||| ||||| |||||||| Sbjct 191470 GCCATCATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGT 191411 Query 14387 CCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14446 |||||| || |||||||| || || | |||| || || | |||| || || | Sbjct 191410 CCAAAAGGAGGCAACAGCTTTCTTGTAAAACTCCCAAATGTCATGATATTGGATGGGCAT 191351 Query 14447 AACTACAAATC-TCGAAGAT 14465 || || |||| |||| ||| Sbjct 191350 CACAACGAATCTTCGAGGAT 191331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479722261253800