Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq948 286 5e-72 seq953 188 1e-42 >seq948 Length=1705571 Score = 286 bits (316), Expect = 5e-72 Identities = 523/755 (69%), Gaps = 21/755 (3%) Strand=Plus/Minus Query 41935 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 41994 ||||||||| || ||||| || || || | || | || |||||||| |||||| Sbjct 192055 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 191996 Query 41995 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGGTGGAT--ACAATAAAT 42050 ||||| || | ||||| || || || ||||| | | ||| | |||||| | Sbjct 191995 AACCGCCTCCCTCATAATG--TCATAAACTCTTTCTGCCGTAGGTTTGTTGACAATA--T 191940 Query 42051 GTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGT 42110 ||||||| || | ||||| || ||| ||| || || ||||| | || || || |||| Sbjct 191939 GTTTAAAAATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGT 191880 Query 42111 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATG 42170 || || ||||| || ||||| || || ||||| || |||||||| ||||| ||||||| Sbjct 191879 TGCTGAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAATG 191820 Query 42171 ATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG 42230 | ||||||||||| | ||||| || || || || || | || | ||| | || | Sbjct 191819 AACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTATGGAG 191760 Query 42231 CACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 42287 | | || | |||||| | ||||||||||||| ||||| ||||| |||| || Sbjct 191759 CCTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCG 191700 Query 42288 TTTCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCGAT 42345 | | | ||| ||||| | | ||| ||| ||| ||| |||| || ||||| || Sbjct 191699 TCTGAACGGCGTTAAACAAAAAGTCGCGTTCC--ACTGGATCCTTAATGTAGGTATCAAT 191642 Query 42346 CAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 42405 || |||| |||||||| ||||| |||||||| | ||| | || | ||||| ||||| Sbjct 191641 CAGAAGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGCATCCCGTAAAAACA 191582 Query 42406 TCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACT 42463 | ||||||| || || ||||| ||||||| ||||| | || |||||| || || Sbjct 191581 ACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGATTTTCATTAACG 191524 Query 42464 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGT 42523 || || ||||||||||||||||| ||||| |||| ||| |||| |||| || Sbjct 191523 ATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCG-CCATC 191465 Query 42524 GTTAATTTATT-CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAA 42582 |||| || ||||||| ||| || || | | ||| ||||| || || |||||||| Sbjct 191464 ATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAA 191405 Query 42583 TGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAAC 42642 || || | || || || || | | ||| || ||||||||||| || || | | ||| Sbjct 191404 GGAGGCAACAGCTTTCTTGTAAAACTCCCAAATGTCATGATATTGGATGGGCATCACAAC 191345 Query 42643 AAATCTATTTGGATTTGGTGCAAGGATCGGTTCCA 42677 ||||| ||||| || |||| | ||||||| Sbjct 191344 GAATCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 191310 >seq953 Length=2188470 Score = 188 bits (208), Expect = 1e-42 Identities = 364/535 (68%), Gaps = 4/535 (1%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || || ||||| || ||||| ||||||||||| || | || ||||||| | | | Sbjct 251875 ACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAGAGATCTCGCGCGCGAGCT 251816 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 |||||| || || ||||| | || | ||| || | ||| | |||||||||| Sbjct 251815 TCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGT 251756 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201 || | || ||||| | | || || || || || || |||||||| | || | ||| Sbjct 251755 TCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACCGAGCA 251696 Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261 || | || | || | | ||| || | || ||| ||||| | ||||| ||||| | | Sbjct 251695 GTACTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCGCCATTAGTCCCAGCG 251636 Query 72262 ATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTT 72319 || | | || | || || | || |||| ||||| ||||| || || ||| Sbjct 251635 ATGAAAGTGCCCTTACTCCGGATACAATGAACATTG--AGACCGATTCCACCAGCACTTT 251578 Query 72320 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 72379 | ||||| | ||| ||| |||| | ||| ||||| |||||||| ||||| ||||| ||| Sbjct 251577 TTGAGATAAGTGCACATTGTTTGAGCGTGTCATATATGCCCTCAATACTGTCATCTTTCA 251518 Query 72380 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 72439 | |||| | ||| ||||| ||||| || || | || || |||||||| | || | Sbjct 251517 TCGTAAGCAAAAAGCAGCTGGACATCTGAGGAATAGGCGTCCCAGCATTAAAAAGAGTGG 251458 Query 72440 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTA 72499 | ||||| || | ||||| ||| | |||| |||||||||||||||||||| | || | Sbjct 251457 GTGAAGCATGAATCAACCACTTTCCGGACATGAGATTGTACGTCTCAATAGCAGCATCAA 251398 Query 72500 TATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 |||| ||| || || | | ||| ||||| ||||||| ||| || || || Sbjct 251397 GATCCTCACCATGGATACCGATAGAGACGCGCATAAACATATACTGGGGCCTCTC 251343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671131171497320