Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq948 219 6e-52 >seq948 Length=1705571 Score = 219 bits (242), Expect = 6e-52 Identities = 518/768 (67%), Gaps = 32/768 (4%) Strand=Plus/Plus Query 125001 CCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACG 125060 |||||| ||||||||||||||||| | ||||| || ||| |||||||||||||| Sbjct 191354 CCCATCCAATATCATGACATTTGGGAGTTTTACAAGAAAGCTGTTGCCTCCTTTTGGACA 191413 Query 125061 GTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACT 125120 || || || |||||| || | |||||||| |||||||| | | || | ||| Sbjct 191414 GTTGAGGAAGTCGATTTGGCGAAGGACCTCACTGATTGGGA-AGGCCTT--AATGATGGC 191470 Query 125121 GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAAC 125180 || || | || ||||| | ||||||| || ||||| | | ||||| ||||| || Sbjct 191471 GAACGTCATTTCATATCTTATGTTTTGGCTTTTTTTGCAGCCAGTGATGGCATCGTTAAT 191530 Query 125181 GACAATCTG---TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTT 125236 || ||||| |||| || || | | | ||| | ||||| |||| |||| | || Sbjct 191531 GAAAATCTAACTTTGA-ACTTTTGTAACGA-AGTCCAA-ATTCCCGAGGC-TCGTTGTTT 191586 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 |||||| | ||| || | || ||| | || || |||||||||||| |||||||| Sbjct 191587 TTACGGGATGCAAGTCGCCGTCGAAAACATCCATTCCGAAATGTACTCTCTTCTGATTGA 191646 Query 125297 CATGTACATTCGCGATCC---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGT 125353 | |||||| ||||| | |||| | | | | |||||||| | | ||| | Sbjct 191647 TACCTACATTAAGGATCCAGTGGAACGCGA---CTTTTTGTTTAACGCCGTTCAGACGCT 191703 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413 ||| | | | ||| || || | |||| || ||||||| | | ||| || | Sbjct 191704 GCCATGTGTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGGATTGCAAATAGGAAGGCTCC 191763 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT 125473 |||||||| | || ||||||||||| || || || ||| | |||||||| ||| || Sbjct 191764 ATACGCCGAGCGGCTAGTGGCATTCGCTGCTGTTGAAGGCGTTTTCTTTTCTGGTTCATT 191823 Query 125474 TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGA 125533 ||| | ||||||||||||||||||||||| |||||||| || || || ||| ||||| Sbjct 191824 TGCTTCTATCTTTTGGCTCAAGAAGCGCGGTCTCATGCCAGGCCTCACCTTCAGCAACGA 191883 Query 125534 GTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTC--TACTGTTTCGCA-A 125590 ||| || || || || ||||| ||| ||||||| ||| | || | || || | Sbjct 191884 GTTGATCAGCCGGGATGAAGGCCTCCACACCGACTTTG-CATGCCTTATTTTTAAACATA 191942 Query 125591 CTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGC 125650 | || | || | ||||| || || | || ||||| | | || || Sbjct 191943 TTGTCAACAAACCTACGGCAGA----------AAGAGTTTAT-GACATTATGAGGGAGGC 191991 Query 125651 CGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAA 125710 || || || ||| || ||||| || || | |||| |||| | ||||||||||| Sbjct 191992 GGTTAGCATTGAATGCGAATTTCTCACAGACGCATTACCTGTCAATCTTATTGGCATGAA 192051 Query 125711 CTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 || ||||||||| | |||||| |||||| || ||||| ||||| Sbjct 192052 TTGTCGCCTAATGTGCCAATACATAAGGTTTGTTGCCGATCGGCTACT 192099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050335079320