Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq956 86.0 5e-12 seq434 82.4 6e-11 >seq956 Length=3269709 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||| || || || || || ||||| || | | || | | | | || || || || Sbjct 2620863 TGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGAC-CGCCCATCCTCCAACTG 2620805 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||| | || | ||| || || || |||||| || || ||||| ||| || Sbjct 2620804 CTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGAATCTT 2620745 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||||||| | || || | ||| | || || || | ||| |||||||| || || Sbjct 2620744 AGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGGGTTATGGTTTTGCCAGT 2620685 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||||||||||| ||||| Sbjct 2620684 AAGAGTTTTTACAAAAATCTGCAT 2620661 >seq434 Length=2816 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || || || || |||||||| ||| || | | | ||||| || || Sbjct 2800 TGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCCAACTGC 2741 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | ||||||||||| ||||| |||||| || || ||||| |||||| Sbjct 2740 TTCCCCGCGAAGATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGAATTTTC 2681 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || ||||| ||| || || | || || || || || ||| Sbjct 2680 GCCTTCACATTCTCAATTGTGTCGCTGGGTTCAACCTCCAGCGTGATTGTCTTGCCAGTC 2621 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | ||| || || || || ||||| Sbjct 2620 AAAGTCTTCACGAAGATCTGCAT 2598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362174975745537